Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
MBD4O95243 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
MBD4O95243 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
MBD4O95243 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.42■□□□□ 0.54
MBD4O95243 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MBD4O95243 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 TMBIM7P-203ENST00000641617 1718 ntBASIC18.41■□□□□ 0.54
MBD4O95243 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.41■□□□□ 0.54
MBD4O95243 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.41■□□□□ 0.54
MBD4O95243 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.41■□□□□ 0.54
MBD4O95243 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 MIR1909-201ENST00000411312 80 ntBASIC18.41■□□□□ 0.54
MBD4O95243 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 KLF2P2-201ENST00000416807 1039 ntBASIC18.41■□□□□ 0.54
MBD4O95243 KRT43P-201ENST00000434019 910 ntBASIC18.41■□□□□ 0.54
MBD4O95243 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.41■□□□□ 0.54
MBD4O95243 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
MBD4O95243 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.41■□□□□ 0.54
MBD4O95243 GNRHR2-203ENST00000581100 1187 ntBASIC18.41■□□□□ 0.54
MBD4O95243 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.41■□□□□ 0.54
MBD4O95243 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
MBD4O95243 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.41■□□□□ 0.54
MBD4O95243 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
MBD4O95243 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.41■□□□□ 0.54
MBD4O95243 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
MBD4O95243 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
MBD4O95243 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
MBD4O95243 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
MBD4O95243 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
MBD4O95243 AC148477.4-201ENST00000613430 1793 ntBASIC18.4■□□□□ 0.54
MBD4O95243 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MBD4O95243 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.4■□□□□ 0.54
MBD4O95243 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 AC104457.1-201ENST00000401024 814 ntBASIC18.4■□□□□ 0.54
MBD4O95243 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.4■□□□□ 0.54
MBD4O95243 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.4■□□□□ 0.54
MBD4O95243 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC18.4■□□□□ 0.54
MBD4O95243 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.4■□□□□ 0.54
MBD4O95243 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.4■□□□□ 0.54
MBD4O95243 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.4■□□□□ 0.54
MBD4O95243 AC017083.2-201ENST00000608069 979 ntBASIC18.4■□□□□ 0.54
MBD4O95243 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MBD4O95243 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC18.4■□□□□ 0.54
MBD4O95243 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
MBD4O95243 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
MBD4O95243 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.4■□□□□ 0.54
MBD4O95243 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
MBD4O95243 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.39■□□□□ 0.54
MBD4O95243 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
MBD4O95243 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms