Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC3O15379 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HDAC3O15379 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HDAC3O15379 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HDAC3O15379 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 AL450487.1-201ENST00000426799 995 ntBASIC15.12■□□□□ 0.01
HDAC3O15379 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.12■□□□□ 0.01
HDAC3O15379 SPDYE11-202ENST00000450699 704 ntBASIC15.12■□□□□ 0.01
HDAC3O15379 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 RPL13AP23-201ENST00000480739 586 ntBASIC15.12■□□□□ 0.01
HDAC3O15379 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.12■□□□□ 0.01
HDAC3O15379 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.12■□□□□ 0.01
HDAC3O15379 RNA5SP416-201ENST00000516838 111 ntBASIC15.12■□□□□ 0.01
HDAC3O15379 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.12■□□□□ 0.01
HDAC3O15379 SPDYE9P-201ENST00000570642 692 ntBASIC15.12■□□□□ 0.01
HDAC3O15379 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.12■□□□□ 0.01
HDAC3O15379 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.12■□□□□ 0.01
HDAC3O15379 SPDYE10P-202ENST00000612005 668 ntBASIC15.12■□□□□ 0.01
HDAC3O15379 SPDYE8P-202ENST00000612377 668 ntBASIC15.12■□□□□ 0.01
HDAC3O15379 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.12■□□□□ 0.01
HDAC3O15379 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 AL365209.1-201ENST00000624418 6473 ntBASIC15.12■□□□□ 0.01
HDAC3O15379 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HDAC3O15379 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.12■□□□□ 0.01
HDAC3O15379 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
HDAC3O15379 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDAC3O15379 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
HDAC3O15379 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
HDAC3O15379 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 FO393414.2-201ENST00000405153 598 ntBASIC15.11■□□□□ 0.01
HDAC3O15379 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 AC079140.1-201ENST00000508039 487 ntBASIC15.11■□□□□ 0.01
HDAC3O15379 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.11■□□□□ 0.01
HDAC3O15379 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.11■□□□□ 0.01
HDAC3O15379 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 AC026120.1-201ENST00000611536 926 ntBASIC15.11■□□□□ 0.01
HDAC3O15379 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.11■□□□□ 0.01
HDAC3O15379 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
HDAC3O15379 AC084121.4-201ENST00000641598 221 ntBASIC15.11■□□□□ 0.01
HDAC3O15379 AF228730.8-201ENST00000642140 221 ntBASIC15.11■□□□□ 0.01
HDAC3O15379 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.11■□□□□ 0.01
HDAC3O15379 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HDAC3O15379 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HDAC3O15379 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HDAC3O15379 AC113367.3-201ENST00000508316 1912 ntBASIC15.11■□□□□ 0.01
HDAC3O15379 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.11■□□□□ 0.01
HDAC3O15379 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDAC3O15379 AC104581.4-201ENST00000623126 3052 ntBASIC15.11■□□□□ 0.01
HDAC3O15379 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDAC3O15379 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HDAC3O15379 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
HDAC3O15379 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms