Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RHBDD3Q9Y3P4 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RHBDD3Q9Y3P4 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RHBDD3Q9Y3P4 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.67□□□□□ -0.22
RHBDD3Q9Y3P4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.67□□□□□ -0.22
RHBDD3Q9Y3P4 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RHBDD3Q9Y3P4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.67□□□□□ -0.22
RHBDD3Q9Y3P4 AC007292.2-201ENST00000593524 1812 ntBASIC13.67□□□□□ -0.22
RHBDD3Q9Y3P4 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AC013726.1-201ENST00000563747 2285 ntBASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 KRT18P13-201ENST00000400056 1290 ntBASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AP006288.1-201ENST00000446065 395 ntBASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AC004967.1-201ENST00000453589 447 ntBASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 SNHG9-202ENST00000564014 471 ntBASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 MIR4453-201ENST00000584019 89 ntBASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 MIR6080-201ENST00000617359 66 ntBASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RHBDD3Q9Y3P4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 RN7SL828P-201ENST00000607615 303 ntBASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 AC007967.4-201ENST00000614700 386 ntBASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms