Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 AC023310.3-201ENST00000557027 670 ntBASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 AC100756.1-201ENST00000562736 682 ntBASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 AC138749.3-201ENST00000567691 622 ntBASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 AC116165.1-201ENST00000611806 668 ntBASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 AC023824.1-201ENST00000562945 2975 ntBASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 SPDYE19P-201ENST00000338590 713 ntBASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 GNAQP1-201ENST00000444815 1067 ntBASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 AJ011932.1-201ENST00000621707 465 ntBASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4E1Q9UPM8 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 AC006058.4-201ENST00000624016 1670 ntBASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 RARRES2P5-201ENST00000564013 466 ntBASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 AC036164.1-201ENST00000570544 333 ntBASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.09■□□□□ 0.17
AP4E1Q9UPM8 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms