Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 BX284668.4-201ENST00000453917 508 ntBASIC17.2■□□□□ 0.34
VTA1Q9NP79 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 AC073413.1-201ENST00000603927 732 ntBASIC17.2■□□□□ 0.34
VTA1Q9NP79 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
VTA1Q9NP79 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VTA1Q9NP79 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.19■□□□□ 0.34
VTA1Q9NP79 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 AL391280.1-201ENST00000506969 1062 ntBASIC17.19■□□□□ 0.34
VTA1Q9NP79 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 AC126915.1-201ENST00000522847 1038 ntBASIC17.19■□□□□ 0.34
VTA1Q9NP79 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 AC008894.3-201ENST00000624324 3103 ntBASIC17.19■□□□□ 0.34
VTA1Q9NP79 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.19■□□□□ 0.34
VTA1Q9NP79 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VTA1Q9NP79 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VTA1Q9NP79 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VTA1Q9NP79 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
VTA1Q9NP79 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VTA1Q9NP79 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms