Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.06■□□□□ 0.16
PCDH9Q9HC56 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDH9Q9HC56 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.05■□□□□ 0.16
PCDH9Q9HC56 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 AC241585.1-201ENST00000433527 519 ntBASIC16.05■□□□□ 0.16
PCDH9Q9HC56 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 TARDBPP1-201ENST00000442013 1203 ntBASIC16.05■□□□□ 0.16
PCDH9Q9HC56 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.05■□□□□ 0.16
PCDH9Q9HC56 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 AL390955.2-201ENST00000603032 514 ntBASIC16.05■□□□□ 0.16
PCDH9Q9HC56 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDH9Q9HC56 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 AC087499.5-201ENST00000452760 1342 ntBASIC16.04■□□□□ 0.16
PCDH9Q9HC56 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 CICP11-201ENST00000434745 2827 ntBASIC16.04■□□□□ 0.16
PCDH9Q9HC56 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 FAM8A3P-201ENST00000427218 844 ntBASIC16.04■□□□□ 0.16
PCDH9Q9HC56 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 RN7SL618P-201ENST00000477850 296 ntBASIC16.04■□□□□ 0.16
PCDH9Q9HC56 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 AL512361.1-201ENST00000554200 418 ntBASIC16.04■□□□□ 0.16
PCDH9Q9HC56 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 AC005498.2-205ENST00000593218 784 ntBASIC16.04■□□□□ 0.16
PCDH9Q9HC56 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.04■□□□□ 0.16
PCDH9Q9HC56 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDH9Q9HC56 AC232323.1-201ENST00000540724 2099 ntBASIC16.04■□□□□ 0.16
PCDH9Q9HC56 REXO1L5P-201ENST00000622260 2098 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms