Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
MMP28Q9H239 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.81□□□□□ -0.2
MMP28Q9H239 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.81□□□□□ -0.2
MMP28Q9H239 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 MRPL20P1-201ENST00000400819 433 ntBASIC13.81□□□□□ -0.2
MMP28Q9H239 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
MMP28Q9H239 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.81□□□□□ -0.2
MMP28Q9H239 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.81□□□□□ -0.2
MMP28Q9H239 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.81□□□□□ -0.2
MMP28Q9H239 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 AC108073.2-201ENST00000464002 357 ntBASIC13.81□□□□□ -0.2
MMP28Q9H239 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.81□□□□□ -0.2
MMP28Q9H239 MPDU1-223ENST00000582151 728 ntBASIC13.81□□□□□ -0.2
MMP28Q9H239 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.81□□□□□ -0.2
MMP28Q9H239 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
MMP28Q9H239 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
MMP28Q9H239 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
MMP28Q9H239 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 MIR1233-2-201ENST00000408138 82 ntBASIC13.8□□□□□ -0.2
MMP28Q9H239 MIR1233-1-201ENST00000408722 82 ntBASIC13.8□□□□□ -0.2
MMP28Q9H239 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
MMP28Q9H239 AC108751.1-201ENST00000490852 363 ntBASIC13.8□□□□□ -0.2
MMP28Q9H239 SLC25A6P2-201ENST00000497974 877 ntBASIC13.8□□□□□ -0.2
MMP28Q9H239 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.8□□□□□ -0.2
MMP28Q9H239 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.8□□□□□ -0.2
MMP28Q9H239 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.8□□□□□ -0.2
MMP28Q9H239 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 AC129492.6-201ENST00000611383 1305 ntBASIC13.8□□□□□ -0.2
MMP28Q9H239 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
MMP28Q9H239 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
MMP28Q9H239 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.8□□□□□ -0.2
MMP28Q9H239 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
MMP28Q9H239 AC023024.2-201ENST00000623561 1993 ntBASIC13.8□□□□□ -0.2
MMP28Q9H239 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
MMP28Q9H239 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
MMP28Q9H239 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.79□□□□□ -0.2
MMP28Q9H239 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms