Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 FGD5P1-202ENST00000614866 2498 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 RPSAP43-201ENST00000402237 625 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AL355306.1-201ENST00000415580 579 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC004832.2-201ENST00000426397 482 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC112482.1-201ENST00000492080 688 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC112191.1-201ENST00000523689 701 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC105233.2-201ENST00000523697 349 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 AF228730.5-201ENST00000530288 346 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 AC007191.1-201ENST00000623179 2995 ntBASIC13.63□□□□□ -0.23
NKX3-1Q99801 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NKX3-1Q99801 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.63□□□□□ -0.23
NKX3-1Q99801 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 CYP4F24P-201ENST00000586049 1580 ntBASIC13.62□□□□□ -0.23
NKX3-1Q99801 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 TFAMP1-201ENST00000412727 736 ntBASIC13.62□□□□□ -0.23
NKX3-1Q99801 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 AC013726.1-201ENST00000563747 2285 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms