Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CMC2-214ENST00000565925 640 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AC005829.1-201ENST00000570002 483 ntBASIC11.69□□□□□ -0.54
LINC00477Q96M19 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AC105339.1-204ENST00000636249 355 ntBASIC11.69□□□□□ -0.54
LINC00477Q96M19 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC11.69□□□□□ -0.54
LINC00477Q96M19 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
LINC00477Q96M19 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 GSN-215ENST00000545652 2428 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 AC084364.1-201ENST00000551967 1556 ntBASIC11.68□□□□□ -0.54
LINC00477Q96M19 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 KRT18P32-201ENST00000424695 1287 ntBASIC11.68□□□□□ -0.54
LINC00477Q96M19 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 FAM8A3P-201ENST00000427218 844 ntBASIC11.68□□□□□ -0.54
LINC00477Q96M19 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CEND1P1-201ENST00000451006 455 ntBASIC11.68□□□□□ -0.54
LINC00477Q96M19 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 LITAF-210ENST00000571976 548 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 LITAF-214ENST00000574703 486 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 AC003101.2-201ENST00000612557 442 ntBASIC11.68□□□□□ -0.54
LINC00477Q96M19 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 TPO-203ENST00000346956 2923 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
LINC00477Q96M19 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
LINC00477Q96M19 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms