Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.68■□□□□ 0.42
ERCC4Q92889 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.68■□□□□ 0.42
ERCC4Q92889 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.68■□□□□ 0.42
ERCC4Q92889 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.68■□□□□ 0.42
ERCC4Q92889 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 KRT8P23-201ENST00000560090 1207 ntBASIC17.68■□□□□ 0.42
ERCC4Q92889 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.68■□□□□ 0.42
ERCC4Q92889 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 AC022145.2-201ENST00000598203 171 ntBASIC17.68■□□□□ 0.42
ERCC4Q92889 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 AC084121.4-201ENST00000641598 221 ntBASIC17.68■□□□□ 0.42
ERCC4Q92889 AF228730.8-201ENST00000642140 221 ntBASIC17.68■□□□□ 0.42
ERCC4Q92889 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.68■□□□□ 0.42
ERCC4Q92889 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.68■□□□□ 0.42
ERCC4Q92889 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ERCC4Q92889 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
ERCC4Q92889 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.67■□□□□ 0.42
ERCC4Q92889 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC4Q92889 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.67■□□□□ 0.42
ERCC4Q92889 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.67■□□□□ 0.42
ERCC4Q92889 AC093520.2-201ENST00000561830 333 ntBASIC17.67■□□□□ 0.42
ERCC4Q92889 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.67■□□□□ 0.42
ERCC4Q92889 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC4Q92889 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC4Q92889 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC4Q92889 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC4Q92889 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ERCC4Q92889 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
ERCC4Q92889 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.67■□□□□ 0.42
ERCC4Q92889 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.66■□□□□ 0.42
ERCC4Q92889 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 AC004832.2-201ENST00000426397 482 ntBASIC17.66■□□□□ 0.42
ERCC4Q92889 HIST3H2BA-201ENST00000436555 524 ntBASIC17.66■□□□□ 0.42
ERCC4Q92889 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.66■□□□□ 0.42
ERCC4Q92889 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.66■□□□□ 0.42
ERCC4Q92889 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.66■□□□□ 0.42
ERCC4Q92889 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
ERCC4Q92889 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 KRT18P58-201ENST00000527480 1120 ntBASIC17.66■□□□□ 0.42
ERCC4Q92889 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.66■□□□□ 0.42
ERCC4Q92889 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.66■□□□□ 0.42
ERCC4Q92889 AC105339.1-204ENST00000636249 355 ntBASIC17.66■□□□□ 0.42
ERCC4Q92889 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ERCC4Q92889 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.66■□□□□ 0.42
ERCC4Q92889 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.66■□□□□ 0.42
ERCC4Q92889 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.66■□□□□ 0.42
ERCC4Q92889 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
ERCC4Q92889 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ERCC4Q92889 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
ERCC4Q92889 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ERCC4Q92889 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms