Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AP002414.1-201ENST00000391405 1147 ntBASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AC073912.3-201ENST00000624414 853 ntBASIC9.62□□□□□ -0.87
LINC00643Q86TS7 VSTM2A-201ENST00000302287 3401 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AC010460.3-201ENST00000511359 1579 ntBASIC9.62□□□□□ -0.87
LINC00643Q86TS7 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 BCL2L11-217ENST00000610735 5120 ntTSL 5 BASIC9.62□□□□□ -0.87
LINC00643Q86TS7 AC022400.8-201ENST00000623453 3599 ntBASIC9.62□□□□□ -0.87
LINC00643Q86TS7 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 DPYSL5-201ENST00000288699 5209 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 LRRN2-201ENST00000367175 5036 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 C9orf106-201ENST00000316786 3145 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 APTR-203ENST00000430801 583 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 PPP1R14BP5-201ENST00000440334 435 ntBASIC9.61□□□□□ -0.87
LINC00643Q86TS7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 KRT18P14-201ENST00000534205 1250 ntBASIC9.61□□□□□ -0.87
LINC00643Q86TS7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 AC009336.1-201ENST00000608941 1553 ntBASIC9.61□□□□□ -0.87
LINC00643Q86TS7 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC9.61□□□□□ -0.87
LINC00643Q86TS7 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms