Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 AC026396.1-201ENST00000419388 421 ntBASIC14.12□□□□□ -0.15
SHFQ7M4L6 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 AL450472.2-201ENST00000603663 1156 ntBASIC14.12□□□□□ -0.15
SHFQ7M4L6 AC140113.2-201ENST00000604370 208 ntBASIC14.12□□□□□ -0.15
SHFQ7M4L6 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 BX640515.1-201ENST00000617215 977 ntBASIC14.12□□□□□ -0.15
SHFQ7M4L6 AC092865.6-201ENST00000642101 219 ntBASIC14.12□□□□□ -0.15
SHFQ7M4L6 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 CICP14-201ENST00000629111 2732 ntBASIC14.12□□□□□ -0.15
SHFQ7M4L6 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHFQ7M4L6 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SHFQ7M4L6 AC005840.4-201ENST00000541242 2494 ntBASIC14.12□□□□□ -0.15
SHFQ7M4L6 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 RPS8P6-201ENST00000426177 609 ntBASIC14.11□□□□□ -0.15
SHFQ7M4L6 AL645939.2-201ENST00000427340 991 ntBASIC14.11□□□□□ -0.15
SHFQ7M4L6 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 AC106730.1-201ENST00000566722 1090 ntBASIC14.11□□□□□ -0.15
SHFQ7M4L6 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 AC091812.2-201ENST00000619081 385 ntBASIC14.11□□□□□ -0.15
SHFQ7M4L6 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHFQ7M4L6 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.11□□□□□ -0.15
SHFQ7M4L6 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHFQ7M4L6 HLA-H-201ENST00000383620 1096 ntBASIC14.1□□□□□ -0.15
SHFQ7M4L6 AC142381.1-201ENST00000426099 345 ntBASIC14.1□□□□□ -0.15
SHFQ7M4L6 AL139010.1-201ENST00000454878 894 ntBASIC14.1□□□□□ -0.15
SHFQ7M4L6 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.1□□□□□ -0.15
SHFQ7M4L6 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.1□□□□□ -0.15
SHFQ7M4L6 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms