Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC144BQ3MJ40 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC144BQ3MJ40 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC144BQ3MJ40 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC144BQ3MJ40 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC144BQ3MJ40 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC144BQ3MJ40 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 ANKRD19P-201ENST00000338192 862 ntBASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 RPL13P2-201ENST00000440687 659 ntBASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 AC091951.1-201ENST00000512854 2465 ntBASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 BTNL10-201ENST00000595971 695 ntBASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 AL158212.4-201ENST00000624062 1286 ntBASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC144BQ3MJ40 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
CCDC144BQ3MJ40 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 KRT8P37-201ENST00000451609 1420 ntBASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 EEF1DP4-201ENST00000446006 880 ntBASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 AC092658.1-201ENST00000505836 891 ntBASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 USP32P1-208ENST00000506594 1164 ntBASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 AC036164.1-201ENST00000570544 333 ntBASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 AC026748.1-201ENST00000624349 3251 ntBASIC18.01■□□□□ 0.47
CCDC144BQ3MJ40 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC144BQ3MJ40 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms