Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 AC007969.1-201ENST00000433675 447 ntBASIC14.98□□□□□ -0.01
COL28A1Q2UY09 Z93015.1-201ENST00000451718 390 ntBASIC14.98□□□□□ -0.01
COL28A1Q2UY09 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 HIST2H2BC-201ENST00000498492 580 ntBASIC14.98□□□□□ -0.01
COL28A1Q2UY09 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.98□□□□□ -0.01
COL28A1Q2UY09 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL28A1Q2UY09 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
COL28A1Q2UY09 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 AL355334.1-201ENST00000417713 215 ntBASIC14.96□□□□□ -0.01
COL28A1Q2UY09 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms