Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.31■□□□□ 0.04
LIMK1P53667 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.31■□□□□ 0.04
LIMK1P53667 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.31■□□□□ 0.04
LIMK1P53667 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.31■□□□□ 0.04
LIMK1P53667 AC138649.2-201ENST00000615886 705 ntBASIC15.31■□□□□ 0.04
LIMK1P53667 AP001505.2-201ENST00000616815 443 ntBASIC15.31■□□□□ 0.04
LIMK1P53667 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.31■□□□□ 0.04
LIMK1P53667 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
LIMK1P53667 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.31■□□□□ 0.04
LIMK1P53667 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIMK1P53667 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIMK1P53667 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIMK1P53667 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.31■□□□□ 0.04
LIMK1P53667 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIMK1P53667 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LIMK1P53667 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LIMK1P53667 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIMK1P53667 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.31■□□□□ 0.04
LIMK1P53667 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIMK1P53667 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.31■□□□□ 0.04
LIMK1P53667 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIMK1P53667 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
LIMK1P53667 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LIMK1P53667 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.3■□□□□ 0.04
LIMK1P53667 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.3■□□□□ 0.04
LIMK1P53667 CYP46A4P-201ENST00000414953 267 ntBASIC15.3■□□□□ 0.04
LIMK1P53667 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.3■□□□□ 0.04
LIMK1P53667 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.3■□□□□ 0.04
LIMK1P53667 AC016700.1-201ENST00000429424 312 ntBASIC15.3■□□□□ 0.04
LIMK1P53667 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.3■□□□□ 0.04
LIMK1P53667 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.3■□□□□ 0.04
LIMK1P53667 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.3■□□□□ 0.04
LIMK1P53667 C8orf49-201ENST00000525043 1968 ntBASIC15.3■□□□□ 0.04
LIMK1P53667 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC15.3■□□□□ 0.04
LIMK1P53667 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.3■□□□□ 0.04
LIMK1P53667 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.3■□□□□ 0.04
LIMK1P53667 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.3■□□□□ 0.04
LIMK1P53667 AL138709.1-201ENST00000614840 1693 ntBASIC15.3■□□□□ 0.04
LIMK1P53667 HYMAI-201ENST00000635591 3347 ntBASIC15.3■□□□□ 0.04
LIMK1P53667 AC005622.1-201ENST00000636801 1703 ntBASIC15.3■□□□□ 0.04
LIMK1P53667 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 AC144831.1-201ENST00000573312 2656 ntBASIC15.3■□□□□ 0.04
LIMK1P53667 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.3■□□□□ 0.04
LIMK1P53667 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIMK1P53667 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LIMK1P53667 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.29■□□□□ 0.04
LIMK1P53667 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
LIMK1P53667 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC15.29■□□□□ 0.04
LIMK1P53667 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.29■□□□□ 0.04
LIMK1P53667 KRT18P64-201ENST00000434946 1219 ntBASIC15.29■□□□□ 0.04
LIMK1P53667 HSPB1P2-201ENST00000448722 546 ntBASIC15.29■□□□□ 0.04
LIMK1P53667 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.29■□□□□ 0.04
LIMK1P53667 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.29■□□□□ 0.04
LIMK1P53667 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
LIMK1P53667 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.29■□□□□ 0.04
LIMK1P53667 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIMK1P53667 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms