Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 CLUHP2-201ENST00000426660 1303 ntBASIC15.26■□□□□ 0.03
CXCL12P48061 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CXCL12P48061 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 AC104784.1-201ENST00000473096 294 ntBASIC15.26■□□□□ 0.03
CXCL12P48061 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 AC125604.1-201ENST00000496255 707 ntBASIC15.26■□□□□ 0.03
CXCL12P48061 MESTP3-201ENST00000503460 968 ntBASIC15.26■□□□□ 0.03
CXCL12P48061 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.26■□□□□ 0.03
CXCL12P48061 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.26■□□□□ 0.03
CXCL12P48061 AC068587.8-201ENST00000641239 219 ntBASIC15.26■□□□□ 0.03
CXCL12P48061 AL645728.2-202ENST00000641679 227 ntBASIC15.26■□□□□ 0.03
CXCL12P48061 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.26■□□□□ 0.03
CXCL12P48061 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.26■□□□□ 0.03
CXCL12P48061 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.26■□□□□ 0.03
CXCL12P48061 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
CXCL12P48061 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
CXCL12P48061 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 AC055811.4-201ENST00000624039 1754 ntBASIC15.26■□□□□ 0.03
CXCL12P48061 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CXCL12P48061 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CXCL12P48061 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CXCL12P48061 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.26■□□□□ 0.03
CXCL12P48061 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CXCL12P48061 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CXCL12P48061 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.25■□□□□ 0.03
CXCL12P48061 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CXCL12P48061 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CXCL12P48061 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.25■□□□□ 0.03
CXCL12P48061 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.25■□□□□ 0.03
CXCL12P48061 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CXCL12P48061 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CXCL12P48061 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.25■□□□□ 0.03
CXCL12P48061 PUDPP3-201ENST00000445368 636 ntBASIC15.25■□□□□ 0.03
CXCL12P48061 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
CXCL12P48061 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.25■□□□□ 0.03
CXCL12P48061 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC15.25■□□□□ 0.03
CXCL12P48061 AC100827.2-201ENST00000563214 1194 ntBASIC15.25■□□□□ 0.03
CXCL12P48061 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC15.25■□□□□ 0.03
CXCL12P48061 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 AC005324.6-201ENST00000587972 613 ntBASIC15.25■□□□□ 0.03
CXCL12P48061 AC020922.3-201ENST00000595064 547 ntBASIC15.25■□□□□ 0.03
CXCL12P48061 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.25■□□□□ 0.03
CXCL12P48061 AC090164.2-201ENST00000611487 516 ntBASIC15.25■□□□□ 0.03
CXCL12P48061 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.25■□□□□ 0.03
CXCL12P48061 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.25■□□□□ 0.03
CXCL12P48061 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CXCL12P48061 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.25■□□□□ 0.03
CXCL12P48061 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
CXCL12P48061 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.24■□□□□ 0.03
CXCL12P48061 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CXCL12P48061 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms