Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
MSX2P35548 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
MSX2P35548 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.89□□□□□ -0.03
MSX2P35548 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MSX2P35548 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
MSX2P35548 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 REXO1L2P-201ENST00000425429 2069 ntBASIC14.88□□□□□ -0.03
MSX2P35548 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
MSX2P35548 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.88□□□□□ -0.03
MSX2P35548 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.88□□□□□ -0.03
MSX2P35548 VN2R19P-201ENST00000442399 1052 ntBASIC14.88□□□□□ -0.03
MSX2P35548 HCG4P8-203ENST00000443049 980 ntBASIC14.88□□□□□ -0.03
MSX2P35548 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.88□□□□□ -0.03
MSX2P35548 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.88□□□□□ -0.03
MSX2P35548 PRELID1P1-202ENST00000567272 903 ntBASIC14.88□□□□□ -0.03
MSX2P35548 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.88□□□□□ -0.03
MSX2P35548 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 AC148477.8-201ENST00000624298 468 ntBASIC14.88□□□□□ -0.03
MSX2P35548 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 AC010507.1-201ENST00000633895 436 ntBASIC14.88□□□□□ -0.03
MSX2P35548 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.88□□□□□ -0.03
MSX2P35548 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.88□□□□□ -0.03
MSX2P35548 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.88□□□□□ -0.03
MSX2P35548 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MSX2P35548 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX2P35548 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.87□□□□□ -0.03
MSX2P35548 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
MSX2P35548 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX2P35548 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
MSX2P35548 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX2P35548 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 AC004987.2-201ENST00000395959 1148 ntBASIC14.87□□□□□ -0.03
MSX2P35548 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.87□□□□□ -0.03
MSX2P35548 FAM8A3P-201ENST00000427218 844 ntBASIC14.87□□□□□ -0.03
MSX2P35548 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.87□□□□□ -0.03
MSX2P35548 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
MSX2P35548 FAM197Y8-203ENST00000450145 560 ntBASIC14.87□□□□□ -0.03
MSX2P35548 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 AC092910.1-201ENST00000482027 1129 ntBASIC14.87□□□□□ -0.03
MSX2P35548 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.87□□□□□ -0.03
MSX2P35548 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC14.87□□□□□ -0.03
MSX2P35548 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.87□□□□□ -0.03
MSX2P35548 LINC01711-201ENST00000598340 967 ntBASIC14.87□□□□□ -0.03
MSX2P35548 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.87□□□□□ -0.03
MSX2P35548 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
MSX2P35548 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MSX2P35548 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms