Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 KRT18P64-201ENST00000434946 1219 ntBASIC15.24■□□□□ 0.03
SHMT2P34897 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 CRB3P1-201ENST00000449338 276 ntBASIC15.24■□□□□ 0.03
SHMT2P34897 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.24■□□□□ 0.03
SHMT2P34897 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.24■□□□□ 0.03
SHMT2P34897 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.24■□□□□ 0.03
SHMT2P34897 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.24■□□□□ 0.03
SHMT2P34897 AC027307.3-201ENST00000594262 1100 ntBASIC15.24■□□□□ 0.03
SHMT2P34897 AL158212.4-201ENST00000624062 1286 ntBASIC15.24■□□□□ 0.03
SHMT2P34897 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
SHMT2P34897 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.24■□□□□ 0.03
SHMT2P34897 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 AL109954.1-202ENST00000564051 2148 ntBASIC15.23■□□□□ 0.03
SHMT2P34897 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 AC106881.1-201ENST00000605849 3329 ntBASIC15.23■□□□□ 0.03
SHMT2P34897 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.23■□□□□ 0.03
SHMT2P34897 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
SHMT2P34897 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.23■□□□□ 0.03
SHMT2P34897 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.23■□□□□ 0.03
SHMT2P34897 AC036164.1-201ENST00000570544 333 ntBASIC15.23■□□□□ 0.03
SHMT2P34897 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.23■□□□□ 0.03
SHMT2P34897 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
SHMT2P34897 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.23■□□□□ 0.03
SHMT2P34897 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.23■□□□□ 0.03
SHMT2P34897 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
SHMT2P34897 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.23■□□□□ 0.03
SHMT2P34897 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.23■□□□□ 0.03
SHMT2P34897 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
SHMT2P34897 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.23■□□□□ 0.03
SHMT2P34897 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.23■□□□□ 0.03
SHMT2P34897 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHMT2P34897 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
SHMT2P34897 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.22■□□□□ 0.03
SHMT2P34897 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.22■□□□□ 0.03
SHMT2P34897 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.22■□□□□ 0.03
SHMT2P34897 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.22■□□□□ 0.03
SHMT2P34897 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.22■□□□□ 0.03
SHMT2P34897 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.22■□□□□ 0.03
SHMT2P34897 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.22■□□□□ 0.03
SHMT2P34897 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 KRT18P43-201ENST00000469825 1281 ntBASIC15.22■□□□□ 0.03
SHMT2P34897 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.22■□□□□ 0.03
SHMT2P34897 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 AC140912.1-201ENST00000577171 1054 ntBASIC15.22■□□□□ 0.03
SHMT2P34897 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.22■□□□□ 0.03
SHMT2P34897 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.22■□□□□ 0.03
SHMT2P34897 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.22■□□□□ 0.03
SHMT2P34897 LINC02084-201ENST00000606069 1096 ntBASIC15.22■□□□□ 0.03
SHMT2P34897 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SHMT2P34897 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms