Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.32■□□□□ 0.04
CDH3P22223 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH3P22223 MTHFR-217ENST00000641820 1569 ntBASIC15.32■□□□□ 0.04
CDH3P22223 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH3P22223 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH3P22223 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.32■□□□□ 0.04
CDH3P22223 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH3P22223 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CDH3P22223 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH3P22223 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 REXO1L1P-202ENST00000608646 1974 ntBASIC15.31■□□□□ 0.04
CDH3P22223 AC023908.3-201ENST00000564211 3047 ntBASIC15.31■□□□□ 0.04
CDH3P22223 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CDH3P22223 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH3P22223 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH3P22223 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
CDH3P22223 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.31■□□□□ 0.04
CDH3P22223 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CDH3P22223 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH3P22223 AC093004.1-201ENST00000508850 424 ntBASIC15.31■□□□□ 0.04
CDH3P22223 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH3P22223 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH3P22223 TPRX2P-201ENST00000535362 881 ntBASIC15.31■□□□□ 0.04
CDH3P22223 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH3P22223 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH3P22223 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH3P22223 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CDH3P22223 AL450472.2-201ENST00000603663 1156 ntBASIC15.31■□□□□ 0.04
CDH3P22223 AL662799.1-202ENST00000614205 422 ntBASIC15.31■□□□□ 0.04
CDH3P22223 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 AF228730.6-201ENST00000641497 218 ntBASIC15.31■□□□□ 0.04
CDH3P22223 AC084121.3-201ENST00000641716 218 ntBASIC15.31■□□□□ 0.04
CDH3P22223 AC105233.6-201ENST00000642093 218 ntBASIC15.31■□□□□ 0.04
CDH3P22223 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
CDH3P22223 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.31■□□□□ 0.04
CDH3P22223 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 GRK6P1-201ENST00000400595 1711 ntBASIC15.31■□□□□ 0.04
CDH3P22223 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH3P22223 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH3P22223 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH3P22223 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH3P22223 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH3P22223 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.3■□□□□ 0.04
CDH3P22223 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 DFFBP1-201ENST00000433250 979 ntBASIC15.3■□□□□ 0.04
CDH3P22223 AL353779.1-201ENST00000434793 351 ntBASIC15.3■□□□□ 0.04
CDH3P22223 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 PHKG1P2-201ENST00000457537 863 ntBASIC15.3■□□□□ 0.04
CDH3P22223 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.3■□□□□ 0.04
CDH3P22223 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH3P22223 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH3P22223 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH3P22223 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH3P22223 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
CDH3P22223 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.29■□□□□ 0.04
CDH3P22223 AC139749.1-202ENST00000617529 3139 ntBASIC15.29■□□□□ 0.04
CDH3P22223 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
CDH3P22223 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH3P22223 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH3P22223 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms