Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.2■□□□□ 0.34
TPM1P09493 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.2■□□□□ 0.34
TPM1P09493 AC074386.1-202ENST00000463561 864 ntBASIC17.2■□□□□ 0.34
TPM1P09493 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.2■□□□□ 0.34
TPM1P09493 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 AC018845.2-201ENST00000568326 409 ntBASIC17.2■□□□□ 0.34
TPM1P09493 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.2■□□□□ 0.34
TPM1P09493 AC026979.3-201ENST00000607315 403 ntBASIC17.2■□□□□ 0.34
TPM1P09493 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM1P09493 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
TPM1P09493 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM1P09493 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TPM1P09493 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC17.2■□□□□ 0.34
TPM1P09493 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.19■□□□□ 0.34
TPM1P09493 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.19■□□□□ 0.34
TPM1P09493 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.19■□□□□ 0.34
TPM1P09493 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.19■□□□□ 0.34
TPM1P09493 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.19■□□□□ 0.34
TPM1P09493 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.19■□□□□ 0.34
TPM1P09493 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TPM1P09493 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.19■□□□□ 0.34
TPM1P09493 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.19■□□□□ 0.34
TPM1P09493 AC064836.3-201ENST00000607928 673 ntBASIC17.19■□□□□ 0.34
TPM1P09493 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.19■□□□□ 0.34
TPM1P09493 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.19■□□□□ 0.34
TPM1P09493 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 ARHGAP23P1-201ENST00000562773 1937 ntBASIC17.19■□□□□ 0.34
TPM1P09493 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TPM1P09493 AKAP8P1-201ENST00000434743 1349 ntBASIC17.19■□□□□ 0.34
TPM1P09493 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TPM1P09493 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 AL136982.4-201ENST00000437689 1740 ntBASIC17.18■□□□□ 0.34
TPM1P09493 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.18■□□□□ 0.34
TPM1P09493 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.18■□□□□ 0.34
TPM1P09493 WASH3P-207ENST00000560956 1394 ntBASIC17.18■□□□□ 0.34
TPM1P09493 FO538757.1-201ENST00000623083 1397 ntBASIC17.18■□□□□ 0.34
TPM1P09493 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TPM1P09493 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.18■□□□□ 0.34
TPM1P09493 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.18■□□□□ 0.34
TPM1P09493 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.18■□□□□ 0.34
TPM1P09493 RPL5P21-201ENST00000404620 815 ntBASIC17.18■□□□□ 0.34
TPM1P09493 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.18■□□□□ 0.34
TPM1P09493 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.18■□□□□ 0.34
TPM1P09493 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.18■□□□□ 0.34
TPM1P09493 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.18■□□□□ 0.34
TPM1P09493 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.18■□□□□ 0.34
TPM1P09493 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.18■□□□□ 0.34
TPM1P09493 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.18■□□□□ 0.34
TPM1P09493 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TPM1P09493 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TPM1P09493 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms