Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.44■□□□□ 0.54
MBD4O95243 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 C18orf15-201ENST00000623680 2534 ntBASIC18.44■□□□□ 0.54
MBD4O95243 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
MBD4O95243 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 ACKR1-201ENST00000368121 1240 ntBASIC18.44■□□□□ 0.54
MBD4O95243 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 AC005229.1-201ENST00000392885 409 ntBASIC18.44■□□□□ 0.54
MBD4O95243 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
MBD4O95243 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.44■□□□□ 0.54
MBD4O95243 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 AC004066.1-201ENST00000502488 802 ntBASIC18.44■□□□□ 0.54
MBD4O95243 SNX29P1-201ENST00000548357 1007 ntBASIC18.44■□□□□ 0.54
MBD4O95243 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.44■□□□□ 0.54
MBD4O95243 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 SAMD11P1-201ENST00000571429 661 ntBASIC18.44■□□□□ 0.54
MBD4O95243 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.44■□□□□ 0.54
MBD4O95243 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.44■□□□□ 0.54
MBD4O95243 AL645728.2-202ENST00000641679 227 ntBASIC18.44■□□□□ 0.54
MBD4O95243 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
MBD4O95243 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
MBD4O95243 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
MBD4O95243 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.44■□□□□ 0.54
MBD4O95243 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.44■□□□□ 0.54
MBD4O95243 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.44■□□□□ 0.54
MBD4O95243 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
MBD4O95243 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.44■□□□□ 0.54
MBD4O95243 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
MBD4O95243 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MBD4O95243 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
MBD4O95243 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.43■□□□□ 0.54
MBD4O95243 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
MBD4O95243 ATP5G2P4-201ENST00000442175 420 ntBASIC18.43■□□□□ 0.54
MBD4O95243 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.43■□□□□ 0.54
MBD4O95243 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.43■□□□□ 0.54
MBD4O95243 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.43■□□□□ 0.54
MBD4O95243 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.43■□□□□ 0.54
MBD4O95243 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
MBD4O95243 AL022328.1-201ENST00000610050 478 ntBASIC18.43■□□□□ 0.54
MBD4O95243 AP005019.2-201ENST00000615104 511 ntBASIC18.43■□□□□ 0.54
MBD4O95243 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.43■□□□□ 0.54
MBD4O95243 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.43■□□□□ 0.54
MBD4O95243 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
MBD4O95243 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.43■□□□□ 0.54
MBD4O95243 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.43■□□□□ 0.54
MBD4O95243 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MBD4O95243 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.43■□□□□ 0.54
MBD4O95243 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.42■□□□□ 0.54
MBD4O95243 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 AL158070.2-201ENST00000623713 1621 ntBASIC18.42■□□□□ 0.54
MBD4O95243 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
MBD4O95243 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.42■□□□□ 0.54
MBD4O95243 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 ANKRD19P-201ENST00000338192 862 ntBASIC18.42■□□□□ 0.54
MBD4O95243 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
MBD4O95243 AC092933.1-201ENST00000393644 945 ntBASIC18.42■□□□□ 0.54
MBD4O95243 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 AC234783.1-201ENST00000441761 496 ntBASIC18.42■□□□□ 0.54
MBD4O95243 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.42■□□□□ 0.54
MBD4O95243 AL355864.2-201ENST00000447420 863 ntBASIC18.42■□□□□ 0.54
MBD4O95243 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.42■□□□□ 0.54
MBD4O95243 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
MBD4O95243 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.42■□□□□ 0.54
MBD4O95243 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.42■□□□□ 0.54
MBD4O95243 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.42■□□□□ 0.54
MBD4O95243 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
MBD4O95243 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
MBD4O95243 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
MBD4O95243 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
MBD4O95243 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms