Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PTPN22Q9Y2R2 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PTPN22Q9Y2R2 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC26.78■■□□□ 1.88
PTPN22Q9Y2R2 AC022517.1-201ENST00000592429 346 ntBASIC26.78■■□□□ 1.88
PTPN22Q9Y2R2 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PTPN22Q9Y2R2 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PTPN22Q9Y2R2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PTPN22Q9Y2R2 PTMA-205ENST00000410064 814 ntTSL 2 BASIC26.77■■□□□ 1.88
PTPN22Q9Y2R2 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC26.77■■□□□ 1.88
PTPN22Q9Y2R2 AC027682.1-201ENST00000562846 899 ntBASIC26.77■■□□□ 1.88
PTPN22Q9Y2R2 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
PTPN22Q9Y2R2 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
PTPN22Q9Y2R2 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
PTPN22Q9Y2R2 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
PTPN22Q9Y2R2 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC26.76■■□□□ 1.87
PTPN22Q9Y2R2 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
PTPN22Q9Y2R2 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.76■■□□□ 1.87
PTPN22Q9Y2R2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 AL121749.1-202ENST00000609313 2153 ntBASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 AL137784.2-201ENST00000607332 1000 ntBASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.75■■□□□ 1.87
PTPN22Q9Y2R2 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
PTPN22Q9Y2R2 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
PTPN22Q9Y2R2 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.74■■□□□ 1.87
PTPN22Q9Y2R2 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
PTPN22Q9Y2R2 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
PTPN22Q9Y2R2 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTPN22Q9Y2R2 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
PTPN22Q9Y2R2 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTPN22Q9Y2R2 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTPN22Q9Y2R2 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.73■■□□□ 1.87
PTPN22Q9Y2R2 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTPN22Q9Y2R2 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTPN22Q9Y2R2 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTPN22Q9Y2R2 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTPN22Q9Y2R2 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
PTPN22Q9Y2R2 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 ASB1-202ENST00000409297 878 ntTSL 5 BASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 RHOF-204ENST00000537265 699 ntTSL 2 BASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.72■■□□□ 1.87
PTPN22Q9Y2R2 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC26.71■■□□□ 1.87
PTPN22Q9Y2R2 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.71■■□□□ 1.87
PTPN22Q9Y2R2 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PTPN22Q9Y2R2 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTPN22Q9Y2R2 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC26.71■■□□□ 1.87
PTPN22Q9Y2R2 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC26.71■■□□□ 1.87
PTPN22Q9Y2R2 AC092171.4-201ENST00000609130 632 ntBASIC26.71■■□□□ 1.87
PTPN22Q9Y2R2 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
PTPN22Q9Y2R2 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
PTPN22Q9Y2R2 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC26.7■■□□□ 1.86
PTPN22Q9Y2R2 AC034268.1-201ENST00000441047 882 ntBASIC26.7■■□□□ 1.86
PTPN22Q9Y2R2 AC008764.7-201ENST00000593779 1081 ntBASIC26.7■■□□□ 1.86
PTPN22Q9Y2R2 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 AC142472.1-201ENST00000612013 1741 ntBASIC26.69■■□□□ 1.86
PTPN22Q9Y2R2 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 SERBP1P1-201ENST00000396021 1160 ntBASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 SP2-202ENST00000613139 908 ntTSL 5 BASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
PTPN22Q9Y2R2 ID1-201ENST00000376105 1233 ntBASIC26.67■■□□□ 1.86
PTPN22Q9Y2R2 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PTPN22Q9Y2R2 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PTPN22Q9Y2R2 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC26.67■■□□□ 1.86
PTPN22Q9Y2R2 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PTPN22Q9Y2R2 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTPN22Q9Y2R2 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PTPN22Q9Y2R2 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
PTPN22Q9Y2R2 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTPN22Q9Y2R2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTPN22Q9Y2R2 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC26.66■■□□□ 1.86
PTPN22Q9Y2R2 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC26.66■■□□□ 1.86
PTPN22Q9Y2R2 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
PTPN22Q9Y2R2 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTPN22Q9Y2R2 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTPN22Q9Y2R2 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
PTPN22Q9Y2R2 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms