Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 KRT18P5-201ENST00000436075 1291 ntBASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
ZC3H4Q9UPT8 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
ZC3H4Q9UPT8 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
ZC3H4Q9UPT8 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
ZC3H4Q9UPT8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC28.46■■■□□ 2.15
ZC3H4Q9UPT8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC28.46■■■□□ 2.15
ZC3H4Q9UPT8 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC28.46■■■□□ 2.15
ZC3H4Q9UPT8 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
ZC3H4Q9UPT8 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC28.45■■■□□ 2.15
ZC3H4Q9UPT8 AC008764.7-201ENST00000593779 1081 ntBASIC28.45■■■□□ 2.15
ZC3H4Q9UPT8 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
ZC3H4Q9UPT8 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 FOXO3B-201ENST00000395675 1928 ntBASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 AC005703.6-201ENST00000623265 1329 ntBASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
ZC3H4Q9UPT8 AC090877.2-201ENST00000558441 1738 ntBASIC28.42■■■□□ 2.14
ZC3H4Q9UPT8 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC28.42■■■□□ 2.14
ZC3H4Q9UPT8 MPST-208ENST00000628507 698 ntTSL 5 BASIC28.42■■■□□ 2.14
ZC3H4Q9UPT8 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.41■■■□□ 2.14
ZC3H4Q9UPT8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
ZC3H4Q9UPT8 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
ZC3H4Q9UPT8 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
ZC3H4Q9UPT8 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
ZC3H4Q9UPT8 HACD1-201ENST00000326961 773 ntTSL 2 BASIC28.4■■■□□ 2.14
ZC3H4Q9UPT8 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
ZC3H4Q9UPT8 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
ZC3H4Q9UPT8 YBX1P1-201ENST00000445822 960 ntBASIC28.4■■■□□ 2.14
ZC3H4Q9UPT8 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
ZC3H4Q9UPT8 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
ZC3H4Q9UPT8 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
ZC3H4Q9UPT8 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
ZC3H4Q9UPT8 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC28.39■■■□□ 2.14
ZC3H4Q9UPT8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
ZC3H4Q9UPT8 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC28.39■■■□□ 2.13
ZC3H4Q9UPT8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.13
ZC3H4Q9UPT8 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
ZC3H4Q9UPT8 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
ZC3H4Q9UPT8 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC28.38■■■□□ 2.13
ZC3H4Q9UPT8 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
ZC3H4Q9UPT8 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.37■■■□□ 2.13
ZC3H4Q9UPT8 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
ZC3H4Q9UPT8 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.37■■■□□ 2.13
ZC3H4Q9UPT8 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.37■■■□□ 2.13
ZC3H4Q9UPT8 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC28.36■■■□□ 2.13
ZC3H4Q9UPT8 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
ZC3H4Q9UPT8 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
ZC3H4Q9UPT8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
ZC3H4Q9UPT8 AC136469.2-201ENST00000623944 1028 ntBASIC28.35■■■□□ 2.13
ZC3H4Q9UPT8 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
ZC3H4Q9UPT8 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
ZC3H4Q9UPT8 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.34■■■□□ 2.13
ZC3H4Q9UPT8 DLX3-202ENST00000512495 834 ntTSL 2 BASIC28.34■■■□□ 2.13
ZC3H4Q9UPT8 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.34■■■□□ 2.13
ZC3H4Q9UPT8 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC28.34■■■□□ 2.13
ZC3H4Q9UPT8 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
ZC3H4Q9UPT8 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
ZC3H4Q9UPT8 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
ZC3H4Q9UPT8 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
ZC3H4Q9UPT8 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC28.33■■■□□ 2.13
ZC3H4Q9UPT8 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
ZC3H4Q9UPT8 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
ZC3H4Q9UPT8 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
ZC3H4Q9UPT8 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
ZC3H4Q9UPT8 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC28.33■■■□□ 2.13
ZC3H4Q9UPT8 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
ZC3H4Q9UPT8 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.12
ZC3H4Q9UPT8 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
ZC3H4Q9UPT8 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
ZC3H4Q9UPT8 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC28.32■■■□□ 2.12
ZC3H4Q9UPT8 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
ZC3H4Q9UPT8 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.32■■■□□ 2.12
ZC3H4Q9UPT8 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms