Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TM9SF3Q9HD45 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.26■■□□□ 1.31
TM9SF3Q9HD45 AC096631.2-201ENST00000436136 790 ntBASIC23.26■■□□□ 1.31
TM9SF3Q9HD45 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.26■■□□□ 1.31
TM9SF3Q9HD45 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
TM9SF3Q9HD45 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.26■■□□□ 1.31
TM9SF3Q9HD45 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
TM9SF3Q9HD45 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.25■■□□□ 1.31
TM9SF3Q9HD45 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
TM9SF3Q9HD45 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC23.25■■□□□ 1.31
TM9SF3Q9HD45 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TM9SF3Q9HD45 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TM9SF3Q9HD45 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TM9SF3Q9HD45 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.23■■□□□ 1.31
TM9SF3Q9HD45 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.23■■□□□ 1.31
TM9SF3Q9HD45 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
TM9SF3Q9HD45 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
TM9SF3Q9HD45 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TM9SF3Q9HD45 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TM9SF3Q9HD45 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 AC090877.2-201ENST00000558441 1738 ntBASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 AC020928.2-201ENST00000588717 2197 ntBASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TM9SF3Q9HD45 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.21■■□□□ 1.31
TM9SF3Q9HD45 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
TM9SF3Q9HD45 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.21■■□□□ 1.31
TM9SF3Q9HD45 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TM9SF3Q9HD45 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
TM9SF3Q9HD45 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TM9SF3Q9HD45 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
TM9SF3Q9HD45 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
TM9SF3Q9HD45 SNX5-217ENST00000606557 1087 ntBASIC23.2■■□□□ 1.3
TM9SF3Q9HD45 AC005837.3-201ENST00000612163 286 ntBASIC23.2■■□□□ 1.3
TM9SF3Q9HD45 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
TM9SF3Q9HD45 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.19■■□□□ 1.3
TM9SF3Q9HD45 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
TM9SF3Q9HD45 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TM9SF3Q9HD45 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TM9SF3Q9HD45 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TM9SF3Q9HD45 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TM9SF3Q9HD45 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.18■■□□□ 1.3
TM9SF3Q9HD45 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TM9SF3Q9HD45 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
TM9SF3Q9HD45 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
TM9SF3Q9HD45 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.18■■□□□ 1.3
TM9SF3Q9HD45 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.18■■□□□ 1.3
TM9SF3Q9HD45 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TM9SF3Q9HD45 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TM9SF3Q9HD45 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TM9SF3Q9HD45 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.17■■□□□ 1.3
TM9SF3Q9HD45 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TM9SF3Q9HD45 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC23.17■■□□□ 1.3
TM9SF3Q9HD45 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.17■■□□□ 1.3
TM9SF3Q9HD45 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.17■■□□□ 1.3
TM9SF3Q9HD45 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
TM9SF3Q9HD45 AC096887.2-201ENST00000623443 1957 ntBASIC23.16■■□□□ 1.3
TM9SF3Q9HD45 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TM9SF3Q9HD45 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TM9SF3Q9HD45 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
TM9SF3Q9HD45 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
TM9SF3Q9HD45 MIR6722-201ENST00000617286 78 ntBASIC23.16■■□□□ 1.3
TM9SF3Q9HD45 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TM9SF3Q9HD45 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.16■■□□□ 1.3
TM9SF3Q9HD45 AC097639.1-201ENST00000565519 1891 ntBASIC23.15■■□□□ 1.3
TM9SF3Q9HD45 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.15■■□□□ 1.3
TM9SF3Q9HD45 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
TM9SF3Q9HD45 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TM9SF3Q9HD45 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.15■■□□□ 1.3
TM9SF3Q9HD45 ERN1-208ENST00000606895 2068 ntBASIC23.15■■□□□ 1.3
TM9SF3Q9HD45 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TM9SF3Q9HD45 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
TM9SF3Q9HD45 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
TM9SF3Q9HD45 DUSP8P4-201ENST00000399538 1761 ntBASIC23.14■■□□□ 1.3
TM9SF3Q9HD45 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.3
TM9SF3Q9HD45 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
TM9SF3Q9HD45 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
TM9SF3Q9HD45 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
TM9SF3Q9HD45 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
TM9SF3Q9HD45 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TM9SF3Q9HD45 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.14■■□□□ 1.29
TM9SF3Q9HD45 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.14■■□□□ 1.29
TM9SF3Q9HD45 AC133561.4-201ENST00000566112 224 ntBASIC23.14■■□□□ 1.29
TM9SF3Q9HD45 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.14■■□□□ 1.29
TM9SF3Q9HD45 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TM9SF3Q9HD45 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.13■■□□□ 1.29
TM9SF3Q9HD45 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TM9SF3Q9HD45 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms