Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.42■□□□□ 0.86
LIME1Q9H400 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.42■□□□□ 0.86
LIME1Q9H400 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIME1Q9H400 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIME1Q9H400 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIME1Q9H400 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIME1Q9H400 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.41■□□□□ 0.86
LIME1Q9H400 AL356740.2-201ENST00000601559 647 ntBASIC20.41■□□□□ 0.86
LIME1Q9H400 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIME1Q9H400 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIME1Q9H400 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.4■□□□□ 0.86
LIME1Q9H400 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LIME1Q9H400 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.4■□□□□ 0.86
LIME1Q9H400 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.4■□□□□ 0.86
LIME1Q9H400 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.39■□□□□ 0.86
LIME1Q9H400 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIME1Q9H400 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.39■□□□□ 0.85
LIME1Q9H400 AC092666.2-201ENST00000613287 246 ntBASIC20.39■□□□□ 0.85
LIME1Q9H400 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.39■□□□□ 0.85
LIME1Q9H400 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIME1Q9H400 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIME1Q9H400 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LIME1Q9H400 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.38■□□□□ 0.85
LIME1Q9H400 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIME1Q9H400 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIME1Q9H400 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.38■□□□□ 0.85
LIME1Q9H400 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIME1Q9H400 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIME1Q9H400 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIME1Q9H400 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.37■□□□□ 0.85
LIME1Q9H400 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.37■□□□□ 0.85
LIME1Q9H400 ZNRF2P3-201ENST00000424200 374 ntBASIC20.37■□□□□ 0.85
LIME1Q9H400 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.37■□□□□ 0.85
LIME1Q9H400 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIME1Q9H400 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.37■□□□□ 0.85
LIME1Q9H400 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIME1Q9H400 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.36■□□□□ 0.85
LIME1Q9H400 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.36■□□□□ 0.85
LIME1Q9H400 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
LIME1Q9H400 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIME1Q9H400 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
LIME1Q9H400 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIME1Q9H400 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.35■□□□□ 0.85
LIME1Q9H400 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.35■□□□□ 0.85
LIME1Q9H400 AL512631.2-201ENST00000604634 923 ntBASIC20.35■□□□□ 0.85
LIME1Q9H400 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIME1Q9H400 AC010501.1-201ENST00000606270 1962 ntBASIC20.35■□□□□ 0.85
LIME1Q9H400 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIME1Q9H400 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIME1Q9H400 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIME1Q9H400 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.34■□□□□ 0.85
LIME1Q9H400 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.34■□□□□ 0.85
LIME1Q9H400 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIME1Q9H400 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIME1Q9H400 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.34■□□□□ 0.85
LIME1Q9H400 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIME1Q9H400 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIME1Q9H400 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIME1Q9H400 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.33■□□□□ 0.85
LIME1Q9H400 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.33■□□□□ 0.85
LIME1Q9H400 AC133561.4-201ENST00000566112 224 ntBASIC20.33■□□□□ 0.85
LIME1Q9H400 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIME1Q9H400 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
LIME1Q9H400 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIME1Q9H400 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIME1Q9H400 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIME1Q9H400 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.32■□□□□ 0.84
LIME1Q9H400 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.32■□□□□ 0.84
LIME1Q9H400 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.32■□□□□ 0.84
LIME1Q9H400 RARRES2P6-201ENST00000567333 442 ntBASIC20.32■□□□□ 0.84
LIME1Q9H400 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIME1Q9H400 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIME1Q9H400 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
LIME1Q9H400 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.31■□□□□ 0.84
LIME1Q9H400 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIME1Q9H400 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIME1Q9H400 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.31■□□□□ 0.84
LIME1Q9H400 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.31■□□□□ 0.84
LIME1Q9H400 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.31■□□□□ 0.84
LIME1Q9H400 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.31■□□□□ 0.84
LIME1Q9H400 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.31■□□□□ 0.84
LIME1Q9H400 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
LIME1Q9H400 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIME1Q9H400 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIME1Q9H400 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIME1Q9H400 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIME1Q9H400 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
LIME1Q9H400 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
LIME1Q9H400 PBX2P1-201ENST00000493219 1291 ntBASIC20.3■□□□□ 0.84
LIME1Q9H400 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIME1Q9H400 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIME1Q9H400 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIME1Q9H400 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIME1Q9H400 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.29■□□□□ 0.84
LIME1Q9H400 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.29■□□□□ 0.84
LIME1Q9H400 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIME1Q9H400 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIME1Q9H400 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
LIME1Q9H400 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.28■□□□□ 0.84
LIME1Q9H400 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms