Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LYSMD1Q96S90 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LYSMD1Q96S90 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.23■■□□□ 1.31
LYSMD1Q96S90 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.23■■□□□ 1.31
LYSMD1Q96S90 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
LYSMD1Q96S90 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.22■■□□□ 1.31
LYSMD1Q96S90 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LYSMD1Q96S90 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
LYSMD1Q96S90 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.22■■□□□ 1.31
LYSMD1Q96S90 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
LYSMD1Q96S90 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LYSMD1Q96S90 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LYSMD1Q96S90 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.2■■□□□ 1.3
LYSMD1Q96S90 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
LYSMD1Q96S90 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.2■■□□□ 1.3
LYSMD1Q96S90 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LYSMD1Q96S90 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
LYSMD1Q96S90 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.19■■□□□ 1.3
LYSMD1Q96S90 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
LYSMD1Q96S90 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LYSMD1Q96S90 AC239859.2-201ENST00000444165 318 ntBASIC23.19■■□□□ 1.3
LYSMD1Q96S90 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.19■■□□□ 1.3
LYSMD1Q96S90 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LYSMD1Q96S90 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LYSMD1Q96S90 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.18■■□□□ 1.3
LYSMD1Q96S90 KRT125P-201ENST00000546827 989 ntBASIC23.18■■□□□ 1.3
LYSMD1Q96S90 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
LYSMD1Q96S90 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.17■■□□□ 1.3
LYSMD1Q96S90 AL161729.1-201ENST00000604104 1402 ntBASIC23.16■■□□□ 1.3
LYSMD1Q96S90 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LYSMD1Q96S90 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
LYSMD1Q96S90 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
LYSMD1Q96S90 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LYSMD1Q96S90 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
LYSMD1Q96S90 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LYSMD1Q96S90 AL139125.2-201ENST00000623134 1869 ntBASIC23.15■■□□□ 1.3
LYSMD1Q96S90 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LYSMD1Q96S90 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
LYSMD1Q96S90 AC131274.2-201ENST00000580697 1507 ntBASIC23.15■■□□□ 1.3
LYSMD1Q96S90 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
LYSMD1Q96S90 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
LYSMD1Q96S90 MIR4787-201ENST00000607364 84 ntBASIC23.15■■□□□ 1.3
LYSMD1Q96S90 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.15■■□□□ 1.3
LYSMD1Q96S90 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.14■■□□□ 1.3
LYSMD1Q96S90 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
LYSMD1Q96S90 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
LYSMD1Q96S90 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.14■■□□□ 1.29
LYSMD1Q96S90 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.14■■□□□ 1.29
LYSMD1Q96S90 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
LYSMD1Q96S90 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
LYSMD1Q96S90 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
LYSMD1Q96S90 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LYSMD1Q96S90 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.13■■□□□ 1.29
LYSMD1Q96S90 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.13■■□□□ 1.29
LYSMD1Q96S90 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.13■■□□□ 1.29
LYSMD1Q96S90 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.13■■□□□ 1.29
LYSMD1Q96S90 AC092028.1-203ENST00000608262 953 ntBASIC23.13■■□□□ 1.29
LYSMD1Q96S90 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LYSMD1Q96S90 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
LYSMD1Q96S90 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LYSMD1Q96S90 GUSBP5-201ENST00000418136 578 ntBASIC23.12■■□□□ 1.29
LYSMD1Q96S90 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LYSMD1Q96S90 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC23.12■■□□□ 1.29
LYSMD1Q96S90 AL022069.1-201ENST00000568025 1636 ntBASIC23.11■■□□□ 1.29
LYSMD1Q96S90 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.11■■□□□ 1.29
LYSMD1Q96S90 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms