Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
RTF1Q92541 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
RTF1Q92541 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC30.43■■■□□ 2.46
RTF1Q92541 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.43■■■□□ 2.46
RTF1Q92541 AL117332.1-201ENST00000622628 974 ntBASIC30.43■■■□□ 2.46
RTF1Q92541 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
RTF1Q92541 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
RTF1Q92541 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
RTF1Q92541 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
RTF1Q92541 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
RTF1Q92541 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
RTF1Q92541 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.42■■■□□ 2.46
RTF1Q92541 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.42■■■□□ 2.46
RTF1Q92541 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.42■■■□□ 2.46
RTF1Q92541 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.42■■■□□ 2.46
RTF1Q92541 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC30.42■■■□□ 2.46
RTF1Q92541 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
RTF1Q92541 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC30.41■■■□□ 2.46
RTF1Q92541 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
RTF1Q92541 CD72-202ENST00000378430 585 ntTSL 3 BASIC30.41■■■□□ 2.46
RTF1Q92541 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.41■■■□□ 2.46
RTF1Q92541 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
RTF1Q92541 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.41■■■□□ 2.46
RTF1Q92541 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
RTF1Q92541 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
RTF1Q92541 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC30.4■■■□□ 2.46
RTF1Q92541 CREM-210ENST00000374721 2020 ntTSL 5 BASIC30.4■■■□□ 2.46
RTF1Q92541 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
RTF1Q92541 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC30.4■■■□□ 2.46
RTF1Q92541 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
RTF1Q92541 MTURN-203ENST00000409688 843 ntTSL 2 BASIC30.39■■■□□ 2.46
RTF1Q92541 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.39■■■□□ 2.46
RTF1Q92541 MIR3621-201ENST00000580529 85 ntBASIC30.39■■■□□ 2.46
RTF1Q92541 AL356740.2-201ENST00000601559 647 ntBASIC30.39■■■□□ 2.46
RTF1Q92541 MIR6722-201ENST00000617286 78 ntBASIC30.39■■■□□ 2.46
RTF1Q92541 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
RTF1Q92541 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
RTF1Q92541 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
RTF1Q92541 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
RTF1Q92541 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC30.38■■■□□ 2.45
RTF1Q92541 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
RTF1Q92541 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.38■■■□□ 2.45
RTF1Q92541 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC30.38■■■□□ 2.45
RTF1Q92541 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
RTF1Q92541 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
RTF1Q92541 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
RTF1Q92541 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC30.38■■■□□ 2.45
RTF1Q92541 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC30.37■■■□□ 2.45
RTF1Q92541 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC30.37■■■□□ 2.45
RTF1Q92541 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC30.37■■■□□ 2.45
RTF1Q92541 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.37■■■□□ 2.45
RTF1Q92541 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.37■■■□□ 2.45
RTF1Q92541 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC30.37■■■□□ 2.45
RTF1Q92541 LSR-205ENST00000427250 1606 ntTSL 2 BASIC30.36■■■□□ 2.45
RTF1Q92541 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
RTF1Q92541 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
RTF1Q92541 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
RTF1Q92541 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.36■■■□□ 2.45
RTF1Q92541 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
RTF1Q92541 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.35■■■□□ 2.45
RTF1Q92541 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC30.35■■■□□ 2.45
RTF1Q92541 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
RTF1Q92541 TFPT-201ENST00000391757 774 ntTSL 5 BASIC30.35■■■□□ 2.45
RTF1Q92541 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
RTF1Q92541 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.35■■■□□ 2.45
RTF1Q92541 AK3-203ENST00000447596 705 ntTSL 2 BASIC30.35■■■□□ 2.45
RTF1Q92541 AC004448.1-201ENST00000458332 883 ntBASIC30.35■■■□□ 2.45
RTF1Q92541 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30.35■■■□□ 2.45
RTF1Q92541 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.35■■■□□ 2.45
RTF1Q92541 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.35■■■□□ 2.45
RTF1Q92541 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.35■■■□□ 2.45
RTF1Q92541 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
RTF1Q92541 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC30.34■■■□□ 2.45
RTF1Q92541 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
RTF1Q92541 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.34■■■□□ 2.45
RTF1Q92541 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
RTF1Q92541 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
RTF1Q92541 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC30.33■■■□□ 2.45
RTF1Q92541 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.33■■■□□ 2.45
RTF1Q92541 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
RTF1Q92541 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC30.33■■■□□ 2.45
RTF1Q92541 AC131281.2-201ENST00000520478 145 ntBASIC30.33■■■□□ 2.45
RTF1Q92541 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC30.33■■■□□ 2.45
RTF1Q92541 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.33■■■□□ 2.45
RTF1Q92541 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
RTF1Q92541 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
RTF1Q92541 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
RTF1Q92541 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.31■■■□□ 2.44
RTF1Q92541 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.31■■■□□ 2.44
RTF1Q92541 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.31■■■□□ 2.44
RTF1Q92541 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
RTF1Q92541 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
RTF1Q92541 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
RTF1Q92541 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
RTF1Q92541 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
RTF1Q92541 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
RTF1Q92541 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
RTF1Q92541 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
RTF1Q92541 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC30.29■■■□□ 2.44
RTF1Q92541 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms