Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SHROOM3Q8TF72 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.8■■□□□ 1.4
SHROOM3Q8TF72 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.8■■□□□ 1.4
SHROOM3Q8TF72 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHROOM3Q8TF72 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.8■■□□□ 1.4
SHROOM3Q8TF72 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHROOM3Q8TF72 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SHROOM3Q8TF72 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SHROOM3Q8TF72 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHROOM3Q8TF72 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.79■■□□□ 1.4
SHROOM3Q8TF72 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.79■■□□□ 1.4
SHROOM3Q8TF72 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHROOM3Q8TF72 THA1P-201ENST00000590384 1145 ntBASIC23.79■■□□□ 1.4
SHROOM3Q8TF72 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SHROOM3Q8TF72 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHROOM3Q8TF72 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 AC090877.2-201ENST00000558441 1738 ntBASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.78■■□□□ 1.4
SHROOM3Q8TF72 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SHROOM3Q8TF72 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
SHROOM3Q8TF72 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.77■■□□□ 1.4
SHROOM3Q8TF72 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
SHROOM3Q8TF72 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.76■■□□□ 1.39
SHROOM3Q8TF72 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
SHROOM3Q8TF72 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
SHROOM3Q8TF72 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SHROOM3Q8TF72 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.76■■□□□ 1.39
SHROOM3Q8TF72 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.76■■□□□ 1.39
SHROOM3Q8TF72 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SHROOM3Q8TF72 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.75■■□□□ 1.39
SHROOM3Q8TF72 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SHROOM3Q8TF72 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHROOM3Q8TF72 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHROOM3Q8TF72 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.74■■□□□ 1.39
SHROOM3Q8TF72 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHROOM3Q8TF72 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHROOM3Q8TF72 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.74■■□□□ 1.39
SHROOM3Q8TF72 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.74■■□□□ 1.39
SHROOM3Q8TF72 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.74■■□□□ 1.39
SHROOM3Q8TF72 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SHROOM3Q8TF72 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SHROOM3Q8TF72 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SHROOM3Q8TF72 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.73■■□□□ 1.39
SHROOM3Q8TF72 GUSBP5-201ENST00000418136 578 ntBASIC23.73■■□□□ 1.39
SHROOM3Q8TF72 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.73■■□□□ 1.39
SHROOM3Q8TF72 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SHROOM3Q8TF72 KRT18P24-201ENST00000344739 1156 ntBASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 AC103834.1-201ENST00000520383 144 ntBASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 AC120024.1-201ENST00000562672 995 ntBASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
SHROOM3Q8TF72 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 HLA-L-211ENST00000482052 1765 ntBASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
SHROOM3Q8TF72 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 AF131216.4-201ENST00000638924 1588 ntBASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 ABCB10P4-201ENST00000566803 2184 ntBASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SHROOM3Q8TF72 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 AC141586.4-201ENST00000624558 1573 ntBASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
SHROOM3Q8TF72 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms