Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.52■■□□□ 1.04
BEST3Q8N1M1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.52■■□□□ 1.04
BEST3Q8N1M1 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
BEST3Q8N1M1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
BEST3Q8N1M1 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BEST3Q8N1M1 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
BEST3Q8N1M1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.51■■□□□ 1.03
BEST3Q8N1M1 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.51■■□□□ 1.03
BEST3Q8N1M1 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.51■■□□□ 1.03
BEST3Q8N1M1 DUSP8P4-201ENST00000399538 1761 ntBASIC21.51■■□□□ 1.03
BEST3Q8N1M1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
BEST3Q8N1M1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.5■■□□□ 1.03
BEST3Q8N1M1 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
BEST3Q8N1M1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
BEST3Q8N1M1 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.49■■□□□ 1.03
BEST3Q8N1M1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
BEST3Q8N1M1 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.49■■□□□ 1.03
BEST3Q8N1M1 AC145676.1-201ENST00000514988 2004 ntBASIC21.49■■□□□ 1.03
BEST3Q8N1M1 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.49■■□□□ 1.03
BEST3Q8N1M1 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BEST3Q8N1M1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BEST3Q8N1M1 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
BEST3Q8N1M1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
BEST3Q8N1M1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
BEST3Q8N1M1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
BEST3Q8N1M1 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.48■■□□□ 1.03
BEST3Q8N1M1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.48■■□□□ 1.03
BEST3Q8N1M1 MIR6724-1-201ENST00000616420 92 ntBASIC21.48■■□□□ 1.03
BEST3Q8N1M1 MIR6724-2-201ENST00000616483 92 ntBASIC21.48■■□□□ 1.03
BEST3Q8N1M1 MIR6724-4-201ENST00000617390 92 ntBASIC21.48■■□□□ 1.03
BEST3Q8N1M1 MIR6724-3-201ENST00000622482 92 ntBASIC21.48■■□□□ 1.03
BEST3Q8N1M1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.48■■□□□ 1.03
BEST3Q8N1M1 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
BEST3Q8N1M1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
BEST3Q8N1M1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.47■■□□□ 1.03
BEST3Q8N1M1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.47■■□□□ 1.03
BEST3Q8N1M1 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BEST3Q8N1M1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
BEST3Q8N1M1 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BEST3Q8N1M1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
BEST3Q8N1M1 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BEST3Q8N1M1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BEST3Q8N1M1 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.46■■□□□ 1.03
BEST3Q8N1M1 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.46■■□□□ 1.03
BEST3Q8N1M1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.46■■□□□ 1.03
BEST3Q8N1M1 AL117332.1-201ENST00000622628 974 ntBASIC21.46■■□□□ 1.03
BEST3Q8N1M1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.46■■□□□ 1.03
BEST3Q8N1M1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
BEST3Q8N1M1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.03
BEST3Q8N1M1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.45■■□□□ 1.02
BEST3Q8N1M1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BEST3Q8N1M1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BEST3Q8N1M1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
BEST3Q8N1M1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.43■■□□□ 1.02
BEST3Q8N1M1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BEST3Q8N1M1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.43■■□□□ 1.02
BEST3Q8N1M1 SNX5-217ENST00000606557 1087 ntBASIC21.43■■□□□ 1.02
BEST3Q8N1M1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BEST3Q8N1M1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BEST3Q8N1M1 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BEST3Q8N1M1 SLC6A10P-202ENST00000431994 2058 ntBASIC21.43■■□□□ 1.02
BEST3Q8N1M1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BEST3Q8N1M1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BEST3Q8N1M1 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.42■■□□□ 1.02
BEST3Q8N1M1 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.42■■□□□ 1.02
BEST3Q8N1M1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BEST3Q8N1M1 AC131281.2-201ENST00000520478 145 ntBASIC21.42■■□□□ 1.02
BEST3Q8N1M1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.42■■□□□ 1.02
BEST3Q8N1M1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.42■■□□□ 1.02
BEST3Q8N1M1 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
BEST3Q8N1M1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.41■■□□□ 1.02
BEST3Q8N1M1 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BEST3Q8N1M1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BEST3Q8N1M1 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BEST3Q8N1M1 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.41■■□□□ 1.02
BEST3Q8N1M1 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.41■■□□□ 1.02
BEST3Q8N1M1 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.41■■□□□ 1.02
BEST3Q8N1M1 MIR3621-201ENST00000580529 85 ntBASIC21.41■■□□□ 1.02
BEST3Q8N1M1 AL356740.2-201ENST00000601559 647 ntBASIC21.41■■□□□ 1.02
BEST3Q8N1M1 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BEST3Q8N1M1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.4■■□□□ 1.02
BEST3Q8N1M1 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BEST3Q8N1M1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms