Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13DQ5THJ4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 ERN1-208ENST00000606895 2068 ntBASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 SRD5A1P1-201ENST00000442297 786 ntBASIC15.89■□□□□ 0.13
VPS13DQ5THJ4 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 RASA4CP-201ENST00000424092 1398 ntBASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 EDA-201ENST00000338901 1233 ntBASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13DQ5THJ4 SERBP1P1-201ENST00000396021 1160 ntBASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 AC090192.1-201ENST00000517740 490 ntBASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 AC142086.6-201ENST00000621154 1765 ntBASIC15.87■□□□□ 0.13
VPS13DQ5THJ4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
VPS13DQ5THJ4 SYT6-210ENST00000641643 1587 ntBASIC15.86■□□□□ 0.13
VPS13DQ5THJ4 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS13DQ5THJ4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC15.86■□□□□ 0.13
VPS13DQ5THJ4 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS13DQ5THJ4 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 LBH-205ENST00000407930 756 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 AC091305.1-201ENST00000479476 895 ntBASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 GRAMD4P4-201ENST00000613563 1115 ntBASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS13DQ5THJ4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13DQ5THJ4 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13DQ5THJ4 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS13DQ5THJ4 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13DQ5THJ4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS13DQ5THJ4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13DQ5THJ4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
VPS13DQ5THJ4 AC131274.2-201ENST00000580697 1507 ntBASIC15.83■□□□□ 0.13
VPS13DQ5THJ4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS13DQ5THJ4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13DQ5THJ4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
VPS13DQ5THJ4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13DQ5THJ4 C17orf82-201ENST00000623772 1530 ntBASIC15.83■□□□□ 0.12
VPS13DQ5THJ4 SF1-220ENST00000626028 704 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13DQ5THJ4 AC006455.2-201ENST00000429931 906 ntBASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
VPS13DQ5THJ4 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13DQ5THJ4 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13DQ5THJ4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
VPS13DQ5THJ4 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VPS13DQ5THJ4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13DQ5THJ4 MIR6722-201ENST00000617286 78 ntBASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms