Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC26.93■■□□□ 1.9
CCDC144BQ3MJ40 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 AC142381.3-201ENST00000568208 1670 ntBASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 AC010501.1-201ENST00000606270 1962 ntBASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC26.92■■□□□ 1.9
CCDC144BQ3MJ40 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC144BQ3MJ40 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.9■■□□□ 1.9
CCDC144BQ3MJ40 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC144BQ3MJ40 AC138932.3-201ENST00000567634 1902 ntBASIC26.9■■□□□ 1.9
CCDC144BQ3MJ40 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC144BQ3MJ40 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
CCDC144BQ3MJ40 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
CCDC144BQ3MJ40 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CCDC144BQ3MJ40 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.89■■□□□ 1.89
CCDC144BQ3MJ40 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC26.89■■□□□ 1.89
CCDC144BQ3MJ40 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
CCDC144BQ3MJ40 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.89
CCDC144BQ3MJ40 AL139125.2-201ENST00000623134 1869 ntBASIC26.88■■□□□ 1.89
CCDC144BQ3MJ40 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.88■■□□□ 1.89
CCDC144BQ3MJ40 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.88■■□□□ 1.89
CCDC144BQ3MJ40 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC144BQ3MJ40 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC144BQ3MJ40 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC144BQ3MJ40 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.86■■□□□ 1.89
CCDC144BQ3MJ40 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC144BQ3MJ40 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.86■■□□□ 1.89
CCDC144BQ3MJ40 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.86■■□□□ 1.89
CCDC144BQ3MJ40 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.86■■□□□ 1.89
CCDC144BQ3MJ40 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC144BQ3MJ40 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 AC022211.4-201ENST00000625094 2161 ntBASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC144BQ3MJ40 AC131281.2-201ENST00000520478 145 ntBASIC26.84■■□□□ 1.89
CCDC144BQ3MJ40 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.84■■□□□ 1.89
CCDC144BQ3MJ40 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.84■■□□□ 1.89
CCDC144BQ3MJ40 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC144BQ3MJ40 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC144BQ3MJ40 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.84■■□□□ 1.89
CCDC144BQ3MJ40 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 SRR-208ENST00000576848 588 ntTSL 4 BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC144BQ3MJ40 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
CCDC144BQ3MJ40 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.88
CCDC144BQ3MJ40 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 MIR935-201ENST00000401179 91 ntBASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 AC010997.5-201ENST00000609182 354 ntBASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 AC011551.1-201ENST00000614101 683 ntBASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC144BQ3MJ40 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.81■■□□□ 1.88
CCDC144BQ3MJ40 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
CCDC144BQ3MJ40 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
CCDC144BQ3MJ40 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 MIR638-201ENST00000385237 100 ntBASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.8■■□□□ 1.88
CCDC144BQ3MJ40 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.8■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms