Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF4P78317 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF4P78317 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF4P78317 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.53■■□□□ 1.04
RNF4P78317 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.53■■□□□ 1.04
RNF4P78317 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF4P78317 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.53■■□□□ 1.04
RNF4P78317 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RNF4P78317 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF4P78317 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RNF4P78317 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF4P78317 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF4P78317 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF4P78317 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RNF4P78317 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RNF4P78317 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.52■■□□□ 1.04
RNF4P78317 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.52■■□□□ 1.04
RNF4P78317 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RNF4P78317 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.52■■□□□ 1.04
RNF4P78317 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
RNF4P78317 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF4P78317 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF4P78317 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.51■■□□□ 1.03
RNF4P78317 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF4P78317 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.51■■□□□ 1.03
RNF4P78317 AC092028.1-203ENST00000608262 953 ntBASIC21.51■■□□□ 1.03
RNF4P78317 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF4P78317 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 AP003733.4-201ENST00000623785 1697 ntBASIC21.5■■□□□ 1.03
RNF4P78317 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
RNF4P78317 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.5■■□□□ 1.03
RNF4P78317 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF4P78317 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF4P78317 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF4P78317 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.5■■□□□ 1.03
RNF4P78317 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF4P78317 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.5■■□□□ 1.03
RNF4P78317 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
RNF4P78317 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF4P78317 AC138932.3-201ENST00000567634 1902 ntBASIC21.49■■□□□ 1.03
RNF4P78317 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RNF4P78317 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF4P78317 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF4P78317 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF4P78317 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.48■■□□□ 1.03
RNF4P78317 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
RNF4P78317 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF4P78317 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF4P78317 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RNF4P78317 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RNF4P78317 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF4P78317 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF4P78317 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.47■■□□□ 1.03
RNF4P78317 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
RNF4P78317 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
RNF4P78317 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF4P78317 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF4P78317 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.47■■□□□ 1.03
RNF4P78317 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RNF4P78317 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
RNF4P78317 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.47■■□□□ 1.03
RNF4P78317 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RNF4P78317 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RNF4P78317 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
RNF4P78317 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.46■■□□□ 1.03
RNF4P78317 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.46■■□□□ 1.03
RNF4P78317 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
RNF4P78317 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RNF4P78317 HLA-L-211ENST00000482052 1765 ntBASIC21.46■■□□□ 1.03
RNF4P78317 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.45■■□□□ 1.03
RNF4P78317 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
RNF4P78317 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.45■■□□□ 1.02
RNF4P78317 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RNF4P78317 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.45■■□□□ 1.02
RNF4P78317 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RNF4P78317 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RNF4P78317 TSPY9P-201ENST00000440215 945 ntBASIC21.45■■□□□ 1.02
RNF4P78317 TSPY11P-201ENST00000442607 1045 ntBASIC21.45■■□□□ 1.02
RNF4P78317 UNC93B8-201ENST00000511903 705 ntBASIC21.45■■□□□ 1.02
RNF4P78317 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.45■■□□□ 1.02
RNF4P78317 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
RNF4P78317 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RNF4P78317 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.44■■□□□ 1.02
RNF4P78317 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RNF4P78317 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.44■■□□□ 1.02
RNF4P78317 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.44■■□□□ 1.02
RNF4P78317 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.44■■□□□ 1.02
RNF4P78317 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
RNF4P78317 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
RNF4P78317 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNF4P78317 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNF4P78317 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNF4P78317 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms