Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLRN1P58418 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLRN1P58418 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CLRN1P58418 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLRN1P58418 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLRN1P58418 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.68■□□□□ 0.9
CLRN1P58418 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CLRN1P58418 AC022616.5-201ENST00000518796 181 ntBASIC20.68■□□□□ 0.9
CLRN1P58418 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLRN1P58418 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.68■□□□□ 0.9
CLRN1P58418 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLRN1P58418 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLRN1P58418 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLRN1P58418 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CLRN1P58418 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLRN1P58418 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.67■□□□□ 0.9
CLRN1P58418 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
CLRN1P58418 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CLRN1P58418 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLRN1P58418 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CLRN1P58418 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.66■□□□□ 0.9
CLRN1P58418 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLRN1P58418 AC010980.1-201ENST00000587192 1142 ntBASIC20.66■□□□□ 0.9
CLRN1P58418 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.66■□□□□ 0.9
CLRN1P58418 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.66■□□□□ 0.9
CLRN1P58418 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLRN1P58418 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLRN1P58418 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
CLRN1P58418 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.66■□□□□ 0.9
CLRN1P58418 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CLRN1P58418 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.65■□□□□ 0.9
CLRN1P58418 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.65■□□□□ 0.9
CLRN1P58418 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.65■□□□□ 0.9
CLRN1P58418 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.65■□□□□ 0.9
CLRN1P58418 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.65■□□□□ 0.9
CLRN1P58418 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.65■□□□□ 0.9
CLRN1P58418 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN1P58418 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.64■□□□□ 0.9
CLRN1P58418 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.64■□□□□ 0.89
CLRN1P58418 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLRN1P58418 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.64■□□□□ 0.89
CLRN1P58418 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLRN1P58418 AC011551.1-201ENST00000614101 683 ntBASIC20.64■□□□□ 0.89
CLRN1P58418 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.64■□□□□ 0.89
CLRN1P58418 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN1P58418 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN1P58418 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.63■□□□□ 0.89
CLRN1P58418 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN1P58418 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN1P58418 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.63■□□□□ 0.89
CLRN1P58418 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.63■□□□□ 0.89
CLRN1P58418 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.63■□□□□ 0.89
CLRN1P58418 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CLRN1P58418 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.63■□□□□ 0.89
CLRN1P58418 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN1P58418 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN1P58418 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN1P58418 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN1P58418 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLRN1P58418 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CLRN1P58418 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.62■□□□□ 0.89
CLRN1P58418 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CLRN1P58418 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.62■□□□□ 0.89
CLRN1P58418 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLRN1P58418 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLRN1P58418 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.61■□□□□ 0.89
CLRN1P58418 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLRN1P58418 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CLRN1P58418 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLRN1P58418 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLRN1P58418 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.61■□□□□ 0.89
CLRN1P58418 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLRN1P58418 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLRN1P58418 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.61■□□□□ 0.89
CLRN1P58418 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CLRN1P58418 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.61■□□□□ 0.89
CLRN1P58418 PVT1_1.1-201ENST00000615125 194 ntBASIC20.61■□□□□ 0.89
CLRN1P58418 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLRN1P58418 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.6■□□□□ 0.89
CLRN1P58418 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.6■□□□□ 0.89
CLRN1P58418 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN1P58418 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN1P58418 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN1P58418 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.59■□□□□ 0.89
CLRN1P58418 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.59■□□□□ 0.89
CLRN1P58418 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN1P58418 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.59■□□□□ 0.89
CLRN1P58418 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN1P58418 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN1P58418 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN1P58418 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLRN1P58418 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms