Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SOX2P48431 RP9P-202ENST00000450133 1212 ntBASIC20.35■□□□□ 0.85
SOX2P48431 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SOX2P48431 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SOX2P48431 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SOX2P48431 AC093536.1-201ENST00000569153 554 ntBASIC20.34■□□□□ 0.85
SOX2P48431 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.34■□□□□ 0.85
SOX2P48431 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SOX2P48431 C9orf163-202ENST00000624034 2573 ntBASIC20.33■□□□□ 0.85
SOX2P48431 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
SOX2P48431 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SOX2P48431 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SOX2P48431 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.33■□□□□ 0.84
SOX2P48431 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX2P48431 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SOX2P48431 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX2P48431 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SOX2P48431 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SOX2P48431 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.32■□□□□ 0.84
SOX2P48431 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX2P48431 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX2P48431 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX2P48431 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX2P48431 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX2P48431 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX2P48431 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SOX2P48431 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX2P48431 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
SOX2P48431 ECEL1P2-201ENST00000461596 1295 ntBASIC20.31■□□□□ 0.84
SOX2P48431 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.31■□□□□ 0.84
SOX2P48431 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SOX2P48431 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX2P48431 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX2P48431 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.3■□□□□ 0.84
SOX2P48431 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX2P48431 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SOX2P48431 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.3■□□□□ 0.84
SOX2P48431 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX2P48431 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX2P48431 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SOX2P48431 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
SOX2P48431 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SOX2P48431 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SOX2P48431 FOXO3B-201ENST00000395675 1928 ntBASIC20.29■□□□□ 0.84
SOX2P48431 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX2P48431 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX2P48431 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX2P48431 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX2P48431 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.29■□□□□ 0.84
SOX2P48431 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.29■□□□□ 0.84
SOX2P48431 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX2P48431 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX2P48431 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX2P48431 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX2P48431 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SOX2P48431 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX2P48431 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.28■□□□□ 0.84
SOX2P48431 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SOX2P48431 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX2P48431 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.28■□□□□ 0.84
SOX2P48431 AC022413.1-201ENST00000624602 984 ntBASIC20.28■□□□□ 0.84
SOX2P48431 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX2P48431 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX2P48431 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SOX2P48431 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SOX2P48431 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX2P48431 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
SOX2P48431 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX2P48431 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.27■□□□□ 0.84
SOX2P48431 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.27■□□□□ 0.84
SOX2P48431 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.27■□□□□ 0.84
SOX2P48431 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SOX2P48431 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
SOX2P48431 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX2P48431 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SOX2P48431 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SOX2P48431 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.27■□□□□ 0.83
SOX2P48431 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.26■□□□□ 0.83
SOX2P48431 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX2P48431 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SOX2P48431 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX2P48431 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.26■□□□□ 0.83
SOX2P48431 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX2P48431 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.26■□□□□ 0.83
SOX2P48431 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX2P48431 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.26■□□□□ 0.83
SOX2P48431 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX2P48431 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX2P48431 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SOX2P48431 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX2P48431 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SOX2P48431 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.25■□□□□ 0.83
SOX2P48431 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX2P48431 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.24■□□□□ 0.83
SOX2P48431 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SOX2P48431 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
SOX2P48431 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.24■□□□□ 0.83
SOX2P48431 MIR7108-201ENST00000614319 87 ntBASIC20.24■□□□□ 0.83
SOX2P48431 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SOX2P48431 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms