Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
BRCA1P38398 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
BRCA1P38398 AP004609.3-201ENST00000610705 1884 ntBASIC28.9■■■□□ 2.22
BRCA1P38398 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC28.9■■■□□ 2.22
BRCA1P38398 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
BRCA1P38398 AC022517.1-201ENST00000592429 346 ntBASIC28.9■■■□□ 2.22
BRCA1P38398 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC28.9■■■□□ 2.22
BRCA1P38398 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC28.9■■■□□ 2.22
BRCA1P38398 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
BRCA1P38398 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
BRCA1P38398 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
BRCA1P38398 AL137784.2-201ENST00000607332 1000 ntBASIC28.89■■■□□ 2.22
BRCA1P38398 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.89■■■□□ 2.22
BRCA1P38398 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.89■■■□□ 2.22
BRCA1P38398 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
BRCA1P38398 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC28.89■■■□□ 2.21
BRCA1P38398 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC28.89■■■□□ 2.21
BRCA1P38398 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC28.89■■■□□ 2.21
BRCA1P38398 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28.89■■■□□ 2.21
BRCA1P38398 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
BRCA1P38398 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
BRCA1P38398 AC008764.7-201ENST00000593779 1081 ntBASIC28.88■■■□□ 2.21
BRCA1P38398 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
BRCA1P38398 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC28.87■■■□□ 2.21
BRCA1P38398 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
BRCA1P38398 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
BRCA1P38398 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.87■■■□□ 2.21
BRCA1P38398 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC28.87■■■□□ 2.21
BRCA1P38398 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.87■■■□□ 2.21
BRCA1P38398 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
BRCA1P38398 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC28.86■■■□□ 2.21
BRCA1P38398 DUX4L2-201ENST00000561772 1275 ntBASIC28.86■■■□□ 2.21
BRCA1P38398 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.86■■■□□ 2.21
BRCA1P38398 DUX4L6-201ENST00000626483 1275 ntBASIC28.86■■■□□ 2.21
BRCA1P38398 DUX4L1-201ENST00000627662 1275 ntBASIC28.86■■■□□ 2.21
BRCA1P38398 DUX4L8-201ENST00000629013 1275 ntBASIC28.86■■■□□ 2.21
BRCA1P38398 DUX4L3-201ENST00000630187 1275 ntBASIC28.86■■■□□ 2.21
BRCA1P38398 DUX4L7-201ENST00000630678 1275 ntBASIC28.86■■■□□ 2.21
BRCA1P38398 DUX4L5-201ENST00000630834 1275 ntBASIC28.86■■■□□ 2.21
BRCA1P38398 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
BRCA1P38398 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC28.85■■■□□ 2.21
BRCA1P38398 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC28.85■■■□□ 2.21
BRCA1P38398 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC28.85■■■□□ 2.21
BRCA1P38398 ID1-201ENST00000376105 1233 ntBASIC28.85■■■□□ 2.21
BRCA1P38398 AL138724.1-201ENST00000606771 1088 ntBASIC28.85■■■□□ 2.21
BRCA1P38398 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
BRCA1P38398 AC005703.6-201ENST00000623265 1329 ntBASIC28.85■■■□□ 2.21
BRCA1P38398 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
BRCA1P38398 SLC47A1P1-202ENST00000449666 945 ntBASIC28.84■■■□□ 2.21
BRCA1P38398 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
BRCA1P38398 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.84■■■□□ 2.21
BRCA1P38398 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
BRCA1P38398 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28.83■■■□□ 2.21
BRCA1P38398 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
BRCA1P38398 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.83■■■□□ 2.21
BRCA1P38398 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC28.83■■■□□ 2.21
BRCA1P38398 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC28.83■■■□□ 2.21
BRCA1P38398 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
BRCA1P38398 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC28.83■■■□□ 2.21
BRCA1P38398 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
BRCA1P38398 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC28.83■■■□□ 2.21
BRCA1P38398 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
BRCA1P38398 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC28.83■■■□□ 2.2
BRCA1P38398 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
BRCA1P38398 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC28.82■■■□□ 2.2
BRCA1P38398 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
BRCA1P38398 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
BRCA1P38398 SNX3-202ENST00000349379 890 ntTSL 2 BASIC28.81■■■□□ 2.2
BRCA1P38398 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC28.81■■■□□ 2.2
BRCA1P38398 AC027612.3-201ENST00000413684 1047 ntBASIC28.81■■■□□ 2.2
BRCA1P38398 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
BRCA1P38398 AC092171.4-201ENST00000609130 632 ntBASIC28.81■■■□□ 2.2
BRCA1P38398 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
BRCA1P38398 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
BRCA1P38398 AK1-201ENST00000223836 736 ntTSL 3 BASIC28.8■■■□□ 2.2
BRCA1P38398 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.8■■■□□ 2.2
BRCA1P38398 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.8■■■□□ 2.2
BRCA1P38398 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC28.8■■■□□ 2.2
BRCA1P38398 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
BRCA1P38398 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
BRCA1P38398 AC099791.2-201ENST00000605725 427 ntBASIC28.8■■■□□ 2.2
BRCA1P38398 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
BRCA1P38398 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC28.8■■■□□ 2.2
BRCA1P38398 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.79■■■□□ 2.2
BRCA1P38398 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC28.79■■■□□ 2.2
BRCA1P38398 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC28.79■■■□□ 2.2
BRCA1P38398 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.79■■■□□ 2.2
BRCA1P38398 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
BRCA1P38398 AC136469.2-201ENST00000623944 1028 ntBASIC28.79■■■□□ 2.2
BRCA1P38398 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC28.79■■■□□ 2.2
BRCA1P38398 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
BRCA1P38398 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC28.78■■■□□ 2.2
BRCA1P38398 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
BRCA1P38398 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC28.78■■■□□ 2.2
BRCA1P38398 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
BRCA1P38398 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC28.77■■■□□ 2.2
BRCA1P38398 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC28.77■■■□□ 2.2
BRCA1P38398 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
BRCA1P38398 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
BRCA1P38398 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.2
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms