Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.96■■□□□ 1.59
SCN1AP35498 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.59
SCN1AP35498 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
SCN1AP35498 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.95■■□□□ 1.58
SCN1AP35498 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC24.95■■□□□ 1.58
SCN1AP35498 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
SCN1AP35498 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.95■■□□□ 1.58
SCN1AP35498 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.95■■□□□ 1.58
SCN1AP35498 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.95■■□□□ 1.58
SCN1AP35498 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
SCN1AP35498 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
SCN1AP35498 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.95■■□□□ 1.58
SCN1AP35498 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
SCN1AP35498 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
SCN1AP35498 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SCN1AP35498 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
SCN1AP35498 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SCN1AP35498 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SCN1AP35498 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.94■■□□□ 1.58
SCN1AP35498 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SCN1AP35498 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
SCN1AP35498 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
SCN1AP35498 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC24.93■■□□□ 1.58
SCN1AP35498 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
SCN1AP35498 AL356441.2-201ENST00000443009 864 ntBASIC24.93■■□□□ 1.58
SCN1AP35498 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
SCN1AP35498 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
SCN1AP35498 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SCN1AP35498 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SCN1AP35498 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
SCN1AP35498 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
SCN1AP35498 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SCN1AP35498 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC24.93■■□□□ 1.58
SCN1AP35498 AC131274.2-201ENST00000580697 1507 ntBASIC24.93■■□□□ 1.58
SCN1AP35498 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SCN1AP35498 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC24.92■■□□□ 1.58
SCN1AP35498 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC24.92■■□□□ 1.58
SCN1AP35498 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
SCN1AP35498 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SCN1AP35498 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SCN1AP35498 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
SCN1AP35498 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SCN1AP35498 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SCN1AP35498 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SCN1AP35498 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC24.91■■□□□ 1.58
SCN1AP35498 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
SCN1AP35498 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC24.91■■□□□ 1.58
SCN1AP35498 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.91■■□□□ 1.58
SCN1AP35498 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC24.91■■□□□ 1.58
SCN1AP35498 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SCN1AP35498 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SCN1AP35498 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SCN1AP35498 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
SCN1AP35498 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SCN1AP35498 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.9■■□□□ 1.58
SCN1AP35498 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SCN1AP35498 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
SCN1AP35498 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
SCN1AP35498 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
SCN1AP35498 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.9■■□□□ 1.58
SCN1AP35498 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
SCN1AP35498 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
SCN1AP35498 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.89■■□□□ 1.57
SCN1AP35498 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.57
SCN1AP35498 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.57
SCN1AP35498 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SCN1AP35498 AC138932.3-201ENST00000567634 1902 ntBASIC24.88■■□□□ 1.57
SCN1AP35498 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.88■■□□□ 1.57
SCN1AP35498 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
SCN1AP35498 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.88■■□□□ 1.57
SCN1AP35498 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
SCN1AP35498 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SCN1AP35498 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SCN1AP35498 TSPY9P-201ENST00000440215 945 ntBASIC24.88■■□□□ 1.57
SCN1AP35498 TSPY11P-201ENST00000442607 1045 ntBASIC24.88■■□□□ 1.57
SCN1AP35498 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
SCN1AP35498 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC24.87■■□□□ 1.57
SCN1AP35498 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
SCN1AP35498 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
SCN1AP35498 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC24.86■■□□□ 1.57
SCN1AP35498 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.86■■□□□ 1.57
SCN1AP35498 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC24.86■■□□□ 1.57
SCN1AP35498 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
SCN1AP35498 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC24.86■■□□□ 1.57
SCN1AP35498 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SCN1AP35498 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
SCN1AP35498 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.86■■□□□ 1.57
SCN1AP35498 MTDHP2-201ENST00000601468 714 ntBASIC24.86■■□□□ 1.57
SCN1AP35498 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
SCN1AP35498 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SCN1AP35498 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC24.85■■□□□ 1.57
SCN1AP35498 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.85■■□□□ 1.57
SCN1AP35498 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SCN1AP35498 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SCN1AP35498 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SCN1AP35498 AC131281.2-201ENST00000520478 145 ntBASIC24.85■■□□□ 1.57
SCN1AP35498 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.85■■□□□ 1.57
SCN1AP35498 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.85■■□□□ 1.57
SCN1AP35498 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.85■■□□□ 1.57
SCN1AP35498 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms