Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FREM3P0C091 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
FREM3P0C091 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.16■□□□□ 0.98
FREM3P0C091 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.16■□□□□ 0.98
FREM3P0C091 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
FREM3P0C091 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
FREM3P0C091 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.16■□□□□ 0.98
FREM3P0C091 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.16■□□□□ 0.98
FREM3P0C091 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.15■□□□□ 0.98
FREM3P0C091 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FREM3P0C091 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FREM3P0C091 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.15■□□□□ 0.98
FREM3P0C091 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
FREM3P0C091 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.15■□□□□ 0.98
FREM3P0C091 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FREM3P0C091 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
FREM3P0C091 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.15■□□□□ 0.98
FREM3P0C091 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
FREM3P0C091 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
FREM3P0C091 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
FREM3P0C091 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.14■□□□□ 0.98
FREM3P0C091 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.14■□□□□ 0.98
FREM3P0C091 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.14■□□□□ 0.98
FREM3P0C091 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FREM3P0C091 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
FREM3P0C091 AC131281.2-201ENST00000520478 145 ntBASIC21.14■□□□□ 0.97
FREM3P0C091 SNX5-217ENST00000606557 1087 ntBASIC21.14■□□□□ 0.97
FREM3P0C091 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.14■□□□□ 0.97
FREM3P0C091 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
FREM3P0C091 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
FREM3P0C091 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
FREM3P0C091 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.13■□□□□ 0.97
FREM3P0C091 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.12■□□□□ 0.97
FREM3P0C091 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
FREM3P0C091 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
FREM3P0C091 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
FREM3P0C091 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.12■□□□□ 0.97
FREM3P0C091 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.12■□□□□ 0.97
FREM3P0C091 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
FREM3P0C091 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
FREM3P0C091 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.11■□□□□ 0.97
FREM3P0C091 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.11■□□□□ 0.97
FREM3P0C091 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
FREM3P0C091 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FREM3P0C091 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FREM3P0C091 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
FREM3P0C091 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.11■□□□□ 0.97
FREM3P0C091 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
FREM3P0C091 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
FREM3P0C091 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FREM3P0C091 AC090877.2-201ENST00000558441 1738 ntBASIC21.1■□□□□ 0.97
FREM3P0C091 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
FREM3P0C091 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
FREM3P0C091 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
FREM3P0C091 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.1■□□□□ 0.97
FREM3P0C091 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.1■□□□□ 0.97
FREM3P0C091 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FREM3P0C091 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.09■□□□□ 0.97
FREM3P0C091 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
FREM3P0C091 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.09■□□□□ 0.97
FREM3P0C091 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
FREM3P0C091 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
FREM3P0C091 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.09■□□□□ 0.97
FREM3P0C091 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
FREM3P0C091 AC138932.3-201ENST00000567634 1902 ntBASIC21.09■□□□□ 0.97
FREM3P0C091 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
FREM3P0C091 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.08■□□□□ 0.97
FREM3P0C091 AL356441.2-201ENST00000443009 864 ntBASIC21.08■□□□□ 0.97
FREM3P0C091 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.08■□□□□ 0.97
FREM3P0C091 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
FREM3P0C091 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
FREM3P0C091 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.08■□□□□ 0.97
FREM3P0C091 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
FREM3P0C091 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
FREM3P0C091 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.08■□□□□ 0.96
FREM3P0C091 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
FREM3P0C091 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
FREM3P0C091 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FREM3P0C091 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FREM3P0C091 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FREM3P0C091 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
FREM3P0C091 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.07■□□□□ 0.96
FREM3P0C091 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
FREM3P0C091 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.06■□□□□ 0.96
FREM3P0C091 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FREM3P0C091 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
FREM3P0C091 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
FREM3P0C091 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
FREM3P0C091 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.06■□□□□ 0.96
FREM3P0C091 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.06■□□□□ 0.96
FREM3P0C091 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.06■□□□□ 0.96
FREM3P0C091 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FREM3P0C091 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
FREM3P0C091 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FREM3P0C091 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FREM3P0C091 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FREM3P0C091 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
FREM3P0C091 AC093323.1-202ENST00000635031 2045 ntBASIC21.05■□□□□ 0.96
FREM3P0C091 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
FREM3P0C091 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms