Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AL356740.2-201ENST00000601559 647 ntBASIC28.34■■■□□ 2.13
COL1A1P02452 AL512631.2-201ENST00000604634 923 ntBASIC28.34■■■□□ 2.13
COL1A1P02452 AC145676.1-201ENST00000514988 2004 ntBASIC28.34■■■□□ 2.13
COL1A1P02452 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
COL1A1P02452 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
COL1A1P02452 QDPR-206ENST00000508623 601 ntTSL 3 BASIC28.34■■■□□ 2.13
COL1A1P02452 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC28.34■■■□□ 2.13
COL1A1P02452 MIR4466-201ENST00000606121 54 ntBASIC28.34■■■□□ 2.13
COL1A1P02452 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL1A1P02452 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
COL1A1P02452 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
COL1A1P02452 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC28.33■■■□□ 2.13
COL1A1P02452 RASSF1-AS1-201ENST00000629828 790 ntBASIC28.33■■■□□ 2.13
COL1A1P02452 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
COL1A1P02452 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC28.32■■■□□ 2.12
COL1A1P02452 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
COL1A1P02452 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
COL1A1P02452 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC28.32■■■□□ 2.12
COL1A1P02452 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
COL1A1P02452 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.31■■■□□ 2.12
COL1A1P02452 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.31■■■□□ 2.12
COL1A1P02452 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC28.31■■■□□ 2.12
COL1A1P02452 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
COL1A1P02452 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
COL1A1P02452 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC28.31■■■□□ 2.12
COL1A1P02452 MIR6089-201ENST00000616698 64 ntBASIC28.31■■■□□ 2.12
COL1A1P02452 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
COL1A1P02452 AC133561.4-201ENST00000566112 224 ntBASIC28.3■■■□□ 2.12
COL1A1P02452 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC28.3■■■□□ 2.12
COL1A1P02452 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC28.29■■■□□ 2.12
COL1A1P02452 AC096631.2-201ENST00000436136 790 ntBASIC28.29■■■□□ 2.12
COL1A1P02452 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
COL1A1P02452 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
COL1A1P02452 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
COL1A1P02452 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
COL1A1P02452 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC28.27■■■□□ 2.12
COL1A1P02452 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
COL1A1P02452 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
COL1A1P02452 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC28.27■■■□□ 2.12
COL1A1P02452 CEBPA-AS1-201ENST00000592982 2198 ntBASIC28.26■■■□□ 2.12
COL1A1P02452 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
COL1A1P02452 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.12
COL1A1P02452 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.26■■■□□ 2.12
COL1A1P02452 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC28.26■■■□□ 2.11
COL1A1P02452 LBH-205ENST00000407930 756 ntTSL 2 BASIC28.26■■■□□ 2.11
COL1A1P02452 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC28.26■■■□□ 2.11
COL1A1P02452 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
COL1A1P02452 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
COL1A1P02452 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC28.25■■■□□ 2.11
COL1A1P02452 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
COL1A1P02452 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
COL1A1P02452 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC28.24■■■□□ 2.11
COL1A1P02452 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
COL1A1P02452 AK3-203ENST00000447596 705 ntTSL 2 BASIC28.24■■■□□ 2.11
COL1A1P02452 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC28.24■■■□□ 2.11
COL1A1P02452 AC005837.3-201ENST00000612163 286 ntBASIC28.24■■■□□ 2.11
COL1A1P02452 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
COL1A1P02452 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
COL1A1P02452 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
COL1A1P02452 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
COL1A1P02452 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC28.23■■■□□ 2.11
COL1A1P02452 TFPT-201ENST00000391757 774 ntTSL 5 BASIC28.23■■■□□ 2.11
COL1A1P02452 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
COL1A1P02452 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC28.23■■■□□ 2.11
COL1A1P02452 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
COL1A1P02452 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
COL1A1P02452 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC28.23■■■□□ 2.11
COL1A1P02452 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
COL1A1P02452 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
COL1A1P02452 AC131274.2-201ENST00000580697 1507 ntBASIC28.22■■■□□ 2.11
COL1A1P02452 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL1A1P02452 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL1A1P02452 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC28.21■■■□□ 2.11
COL1A1P02452 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC28.21■■■□□ 2.11
COL1A1P02452 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
COL1A1P02452 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL1A1P02452 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC28.21■■■□□ 2.11
COL1A1P02452 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC28.21■■■□□ 2.11
COL1A1P02452 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC28.21■■■□□ 2.11
COL1A1P02452 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.11
COL1A1P02452 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC28.2■■■□□ 2.11
COL1A1P02452 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL1A1P02452 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC28.2■■■□□ 2.1
COL1A1P02452 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC28.2■■■□□ 2.1
COL1A1P02452 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL1A1P02452 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL1A1P02452 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC28.19■■■□□ 2.1
COL1A1P02452 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC28.19■■■□□ 2.1
COL1A1P02452 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL1A1P02452 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL1A1P02452 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC28.18■■■□□ 2.1
COL1A1P02452 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL1A1P02452 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL1A1P02452 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
COL1A1P02452 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL1A1P02452 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL1A1P02452 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC28.17■■■□□ 2.1
COL1A1P02452 MIR6722-201ENST00000617286 78 ntBASIC28.17■■■□□ 2.1
COL1A1P02452 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
COL1A1P02452 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms