Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.26■■□□□ 1.15
LDLRP01130 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LDLRP01130 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.26■■□□□ 1.15
LDLRP01130 AC139795.1-202ENST00000500444 432 ntBASIC22.26■■□□□ 1.15
LDLRP01130 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LDLRP01130 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
LDLRP01130 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
LDLRP01130 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LDLRP01130 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LDLRP01130 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.25■■□□□ 1.15
LDLRP01130 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDLRP01130 SPCS2P3-201ENST00000500401 656 ntBASIC22.25■■□□□ 1.15
LDLRP01130 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDLRP01130 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDLRP01130 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDLRP01130 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDLRP01130 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LDLRP01130 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.25■■□□□ 1.15
LDLRP01130 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.25■■□□□ 1.15
LDLRP01130 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LDLRP01130 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
LDLRP01130 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LDLRP01130 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
LDLRP01130 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.24■■□□□ 1.15
LDLRP01130 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
LDLRP01130 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.24■■□□□ 1.15
LDLRP01130 AC025884.2-201ENST00000553429 711 ntBASIC22.24■■□□□ 1.15
LDLRP01130 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LDLRP01130 AC141586.4-201ENST00000624558 1573 ntBASIC22.24■■□□□ 1.15
LDLRP01130 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
LDLRP01130 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LDLRP01130 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDLRP01130 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDLRP01130 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LDLRP01130 MIR935-201ENST00000401179 91 ntBASIC22.23■■□□□ 1.15
LDLRP01130 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDLRP01130 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.23■■□□□ 1.15
LDLRP01130 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
LDLRP01130 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDLRP01130 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
LDLRP01130 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
LDLRP01130 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.23■■□□□ 1.15
LDLRP01130 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDLRP01130 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
LDLRP01130 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
LDLRP01130 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LDLRP01130 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.22■■□□□ 1.15
LDLRP01130 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LDLRP01130 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LDLRP01130 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LDLRP01130 RAP2CP1-202ENST00000605179 643 ntBASIC22.22■■□□□ 1.15
LDLRP01130 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
LDLRP01130 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LDLRP01130 SLC6A10P-202ENST00000431994 2058 ntBASIC22.21■■□□□ 1.15
LDLRP01130 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.21■■□□□ 1.15
LDLRP01130 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.21■■□□□ 1.15
LDLRP01130 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.21■■□□□ 1.15
LDLRP01130 AC093536.1-201ENST00000569153 554 ntBASIC22.21■■□□□ 1.15
LDLRP01130 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.21■■□□□ 1.15
LDLRP01130 AC079834.2-201ENST00000609776 1949 ntBASIC22.21■■□□□ 1.15
LDLRP01130 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LDLRP01130 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LDLRP01130 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.21■■□□□ 1.15
LDLRP01130 AL359258.2-201ENST00000564063 1566 ntBASIC22.21■■□□□ 1.15
LDLRP01130 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
LDLRP01130 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LDLRP01130 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
LDLRP01130 MIR6765-201ENST00000614092 87 ntBASIC22.2■■□□□ 1.14
LDLRP01130 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LDLRP01130 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LDLRP01130 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
LDLRP01130 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LDLRP01130 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
LDLRP01130 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LDLRP01130 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LDLRP01130 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC22.19■■□□□ 1.14
LDLRP01130 AL356441.2-201ENST00000443009 864 ntBASIC22.19■■□□□ 1.14
LDLRP01130 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
LDLRP01130 PVT1_1.1-201ENST00000615125 194 ntBASIC22.19■■□□□ 1.14
LDLRP01130 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LDLRP01130 DUSP8P5-201ENST00000422884 1815 ntBASIC22.19■■□□□ 1.14
LDLRP01130 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
LDLRP01130 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
LDLRP01130 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LDLRP01130 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.18■■□□□ 1.14
LDLRP01130 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LDLRP01130 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LDLRP01130 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LDLRP01130 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
LDLRP01130 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.17■■□□□ 1.14
LDLRP01130 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
LDLRP01130 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
LDLRP01130 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
LDLRP01130 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
LDLRP01130 MIR4508-201ENST00000584178 70 ntBASIC22.17■■□□□ 1.14
LDLRP01130 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.17■■□□□ 1.14
LDLRP01130 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LDLRP01130 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LDLRP01130 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LDLRP01130 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms