Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MSH4O15457 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MSH4O15457 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MSH4O15457 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MSH4O15457 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MSH4O15457 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MSH4O15457 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC26.26■■□□□ 1.79
MSH4O15457 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MSH4O15457 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
MSH4O15457 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.25■■□□□ 1.79
MSH4O15457 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
MSH4O15457 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH4O15457 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
MSH4O15457 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.24■■□□□ 1.79
MSH4O15457 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.24■■□□□ 1.79
MSH4O15457 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC26.24■■□□□ 1.79
MSH4O15457 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
MSH4O15457 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH4O15457 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH4O15457 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
MSH4O15457 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH4O15457 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
MSH4O15457 AP003733.4-201ENST00000623785 1697 ntBASIC26.23■■□□□ 1.79
MSH4O15457 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.23■■□□□ 1.79
MSH4O15457 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.23■■□□□ 1.79
MSH4O15457 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
MSH4O15457 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.22■■□□□ 1.79
MSH4O15457 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.22■■□□□ 1.79
MSH4O15457 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH4O15457 AC092028.1-203ENST00000608262 953 ntBASIC26.22■■□□□ 1.79
MSH4O15457 HLA-L-211ENST00000482052 1765 ntBASIC26.22■■□□□ 1.79
MSH4O15457 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH4O15457 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH4O15457 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH4O15457 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
MSH4O15457 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC26.21■■□□□ 1.79
MSH4O15457 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH4O15457 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
MSH4O15457 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
MSH4O15457 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
MSH4O15457 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.21■■□□□ 1.79
MSH4O15457 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
MSH4O15457 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC26.2■■□□□ 1.79
MSH4O15457 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
MSH4O15457 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH4O15457 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.2■■□□□ 1.78
MSH4O15457 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.2■■□□□ 1.78
MSH4O15457 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH4O15457 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
MSH4O15457 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
MSH4O15457 UNC93B8-201ENST00000511903 705 ntBASIC26.19■■□□□ 1.78
MSH4O15457 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.19■■□□□ 1.78
MSH4O15457 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
MSH4O15457 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH4O15457 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
MSH4O15457 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH4O15457 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC26.18■■□□□ 1.78
MSH4O15457 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH4O15457 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.18■■□□□ 1.78
MSH4O15457 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.18■■□□□ 1.78
MSH4O15457 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.17■■□□□ 1.78
MSH4O15457 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.17■■□□□ 1.78
MSH4O15457 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.17■■□□□ 1.78
MSH4O15457 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
MSH4O15457 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.16■■□□□ 1.78
MSH4O15457 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.16■■□□□ 1.78
MSH4O15457 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
MSH4O15457 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.16■■□□□ 1.78
MSH4O15457 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
MSH4O15457 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
MSH4O15457 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
MSH4O15457 TSPY9P-201ENST00000440215 945 ntBASIC26.15■■□□□ 1.78
MSH4O15457 TSPY11P-201ENST00000442607 1045 ntBASIC26.15■■□□□ 1.78
MSH4O15457 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.15■■□□□ 1.78
MSH4O15457 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.15■■□□□ 1.78
MSH4O15457 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.15■■□□□ 1.78
MSH4O15457 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
MSH4O15457 AC131274.2-201ENST00000580697 1507 ntBASIC26.14■■□□□ 1.78
MSH4O15457 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH4O15457 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH4O15457 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.14■■□□□ 1.78
MSH4O15457 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.14■■□□□ 1.78
MSH4O15457 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH4O15457 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.14■■□□□ 1.78
MSH4O15457 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.14■■□□□ 1.78
MSH4O15457 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.14■■□□□ 1.78
MSH4O15457 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.14■■□□□ 1.78
MSH4O15457 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.14■■□□□ 1.78
MSH4O15457 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH4O15457 SNX5-217ENST00000606557 1087 ntBASIC26.14■■□□□ 1.78
MSH4O15457 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
MSH4O15457 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.14■■□□□ 1.78
MSH4O15457 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH4O15457 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
MSH4O15457 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.78
MSH4O15457 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.14■■□□□ 1.77
MSH4O15457 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
MSH4O15457 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
MSH4O15457 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
MSH4O15457 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 141.8 ms