Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC25.23■■□□□ 1.63
SOX1O00570 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
SOX1O00570 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SOX1O00570 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SOX1O00570 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC25.23■■□□□ 1.63
SOX1O00570 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SOX1O00570 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.23■■□□□ 1.63
SOX1O00570 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.23■■□□□ 1.63
SOX1O00570 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SOX1O00570 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SOX1O00570 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.22■■□□□ 1.63
SOX1O00570 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC25.22■■□□□ 1.63
SOX1O00570 AL138724.1-201ENST00000606771 1088 ntBASIC25.22■■□□□ 1.63
SOX1O00570 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SOX1O00570 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SOX1O00570 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SOX1O00570 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
SOX1O00570 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC25.21■■□□□ 1.63
SOX1O00570 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SOX1O00570 AC233992.3-201ENST00000607491 485 ntBASIC25.21■■□□□ 1.63
SOX1O00570 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SOX1O00570 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.21■■□□□ 1.63
SOX1O00570 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
SOX1O00570 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SOX1O00570 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
SOX1O00570 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
SOX1O00570 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.2■■□□□ 1.62
SOX1O00570 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.2■■□□□ 1.62
SOX1O00570 NTF6G-201ENST00000591094 616 ntBASIC25.2■■□□□ 1.62
SOX1O00570 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.2■■□□□ 1.62
SOX1O00570 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SOX1O00570 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
SOX1O00570 AC104771.1-201ENST00000603335 964 ntBASIC25.19■■□□□ 1.62
SOX1O00570 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC25.19■■□□□ 1.62
SOX1O00570 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SOX1O00570 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
SOX1O00570 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC25.18■■□□□ 1.62
SOX1O00570 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC25.18■■□□□ 1.62
SOX1O00570 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SOX1O00570 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
SOX1O00570 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
SOX1O00570 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SOX1O00570 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SOX1O00570 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.17■■□□□ 1.62
SOX1O00570 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SOX1O00570 RAP2CP1-201ENST00000605103 478 ntBASIC25.17■■□□□ 1.62
SOX1O00570 AC080038.1-201ENST00000611274 1154 ntBASIC25.17■■□□□ 1.62
SOX1O00570 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.17■■□□□ 1.62
SOX1O00570 AC245100.8-202ENST00000629247 1058 ntBASIC25.17■■□□□ 1.62
SOX1O00570 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.17■■□□□ 1.62
SOX1O00570 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
SOX1O00570 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
SOX1O00570 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SOX1O00570 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SOX1O00570 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.16■■□□□ 1.62
SOX1O00570 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
SOX1O00570 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SOX1O00570 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.15■■□□□ 1.62
SOX1O00570 AC123595.1-201ENST00000440769 1046 ntBASIC25.15■■□□□ 1.62
SOX1O00570 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.15■■□□□ 1.62
SOX1O00570 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
SOX1O00570 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SOX1O00570 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SOX1O00570 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
SOX1O00570 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC25.14■■□□□ 1.62
SOX1O00570 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SOX1O00570 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC25.14■■□□□ 1.62
SOX1O00570 CCDC92B-201ENST00000575506 885 ntBASIC25.14■■□□□ 1.62
SOX1O00570 AC136469.2-201ENST00000623944 1028 ntBASIC25.14■■□□□ 1.62
SOX1O00570 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
SOX1O00570 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
SOX1O00570 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
SOX1O00570 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.14■■□□□ 1.61
SOX1O00570 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.13■■□□□ 1.61
SOX1O00570 AL449106.1-201ENST00000608517 1980 ntBASIC25.13■■□□□ 1.61
SOX1O00570 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
SOX1O00570 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SOX1O00570 AC027612.3-201ENST00000413684 1047 ntBASIC25.13■■□□□ 1.61
SOX1O00570 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SOX1O00570 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC25.13■■□□□ 1.61
SOX1O00570 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.13■■□□□ 1.61
SOX1O00570 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SOX1O00570 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SOX1O00570 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SOX1O00570 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SOX1O00570 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.12■■□□□ 1.61
SOX1O00570 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC25.12■■□□□ 1.61
SOX1O00570 AL355802.2-201ENST00000402069 882 ntBASIC25.12■■□□□ 1.61
SOX1O00570 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.12■■□□□ 1.61
SOX1O00570 BX842568.3-201ENST00000418104 571 ntBASIC25.12■■□□□ 1.61
SOX1O00570 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.12■■□□□ 1.61
SOX1O00570 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC25.12■■□□□ 1.61
SOX1O00570 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC25.12■■□□□ 1.61
SOX1O00570 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SOX1O00570 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SOX1O00570 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.11■■□□□ 1.61
SOX1O00570 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.11■■□□□ 1.61
SOX1O00570 BX255925.1-201ENST00000566954 1854 ntBASIC25.11■■□□□ 1.61
SOX1O00570 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SOX1O00570 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms