Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGN4O00479 AC090877.2-201ENST00000558441 1738 ntBASIC21.65■■□□□ 1.06
HMGN4O00479 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGN4O00479 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGN4O00479 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
HMGN4O00479 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGN4O00479 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGN4O00479 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HMGN4O00479 AL592295.1-201ENST00000400984 884 ntBASIC21.64■■□□□ 1.05
HMGN4O00479 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.64■■□□□ 1.05
HMGN4O00479 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
HMGN4O00479 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
HMGN4O00479 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGN4O00479 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
HMGN4O00479 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.63■■□□□ 1.05
HMGN4O00479 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGN4O00479 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGN4O00479 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.63■■□□□ 1.05
HMGN4O00479 LONRF2P2-201ENST00000439212 571 ntBASIC21.63■■□□□ 1.05
HMGN4O00479 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
HMGN4O00479 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
HMGN4O00479 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGN4O00479 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
HMGN4O00479 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.62■■□□□ 1.05
HMGN4O00479 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGN4O00479 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
HMGN4O00479 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.62■■□□□ 1.05
HMGN4O00479 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGN4O00479 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGN4O00479 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
HMGN4O00479 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.61■■□□□ 1.05
HMGN4O00479 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.61■■□□□ 1.05
HMGN4O00479 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
HMGN4O00479 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.6■■□□□ 1.05
HMGN4O00479 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
HMGN4O00479 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.6■■□□□ 1.05
HMGN4O00479 ABHD17AP5-201ENST00000580133 923 ntBASIC21.6■■□□□ 1.05
HMGN4O00479 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGN4O00479 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGN4O00479 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
HMGN4O00479 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
HMGN4O00479 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
HMGN4O00479 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.6■■□□□ 1.05
HMGN4O00479 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
HMGN4O00479 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.59■■□□□ 1.05
HMGN4O00479 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
HMGN4O00479 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGN4O00479 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HMGN4O00479 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.59■■□□□ 1.05
HMGN4O00479 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.59■■□□□ 1.05
HMGN4O00479 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
HMGN4O00479 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGN4O00479 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HMGN4O00479 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.58■■□□□ 1.05
HMGN4O00479 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HMGN4O00479 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGN4O00479 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGN4O00479 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HMGN4O00479 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
HMGN4O00479 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGN4O00479 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGN4O00479 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGN4O00479 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGN4O00479 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
HMGN4O00479 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGN4O00479 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.56■■□□□ 1.04
HMGN4O00479 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGN4O00479 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.56■■□□□ 1.04
HMGN4O00479 NTF6A-201ENST00000591175 560 ntBASIC21.56■■□□□ 1.04
HMGN4O00479 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
HMGN4O00479 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGN4O00479 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGN4O00479 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGN4O00479 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
HMGN4O00479 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGN4O00479 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGN4O00479 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGN4O00479 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGN4O00479 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGN4O00479 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
HMGN4O00479 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGN4O00479 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGN4O00479 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGN4O00479 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGN4O00479 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.54■■□□□ 1.04
HMGN4O00479 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGN4O00479 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGN4O00479 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGN4O00479 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
HMGN4O00479 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGN4O00479 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGN4O00479 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGN4O00479 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGN4O00479 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGN4O00479 DUX4L18-201ENST00000553347 1267 ntBASIC21.53■■□□□ 1.04
HMGN4O00479 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGN4O00479 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGN4O00479 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGN4O00479 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGN4O00479 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms