Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SMIM28A0A1B0GU29 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.09■■□□□ 1.61
SMIM28A0A1B0GU29 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
SMIM28A0A1B0GU29 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SMIM28A0A1B0GU29 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SMIM28A0A1B0GU29 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SMIM28A0A1B0GU29 MIR6724-1-201ENST00000616420 92 ntBASIC25.08■■□□□ 1.61
SMIM28A0A1B0GU29 MIR6724-2-201ENST00000616483 92 ntBASIC25.08■■□□□ 1.61
SMIM28A0A1B0GU29 MIR6724-4-201ENST00000617390 92 ntBASIC25.08■■□□□ 1.61
SMIM28A0A1B0GU29 MIR6724-3-201ENST00000622482 92 ntBASIC25.08■■□□□ 1.61
SMIM28A0A1B0GU29 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
SMIM28A0A1B0GU29 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SMIM28A0A1B0GU29 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.07■■□□□ 1.6
SMIM28A0A1B0GU29 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.07■■□□□ 1.6
SMIM28A0A1B0GU29 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SMIM28A0A1B0GU29 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SMIM28A0A1B0GU29 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SMIM28A0A1B0GU29 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SMIM28A0A1B0GU29 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SMIM28A0A1B0GU29 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC25.06■■□□□ 1.6
SMIM28A0A1B0GU29 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SMIM28A0A1B0GU29 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.06■■□□□ 1.6
SMIM28A0A1B0GU29 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.06■■□□□ 1.6
SMIM28A0A1B0GU29 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SMIM28A0A1B0GU29 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SMIM28A0A1B0GU29 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SMIM28A0A1B0GU29 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.05■■□□□ 1.6
SMIM28A0A1B0GU29 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.05■■□□□ 1.6
SMIM28A0A1B0GU29 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.05■■□□□ 1.6
SMIM28A0A1B0GU29 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SMIM28A0A1B0GU29 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC25.05■■□□□ 1.6
SMIM28A0A1B0GU29 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 MIR6722-201ENST00000617286 78 ntBASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SMIM28A0A1B0GU29 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 AL117332.1-201ENST00000622628 974 ntBASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SMIM28A0A1B0GU29 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.02■■□□□ 1.6
SMIM28A0A1B0GU29 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.02■■□□□ 1.6
SMIM28A0A1B0GU29 AC004448.1-201ENST00000458332 883 ntBASIC25.02■■□□□ 1.6
SMIM28A0A1B0GU29 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SMIM28A0A1B0GU29 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 MIR3621-201ENST00000580529 85 ntBASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 AC008406.3-201ENST00000620001 1374 ntBASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SMIM28A0A1B0GU29 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
SMIM28A0A1B0GU29 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
SMIM28A0A1B0GU29 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SMIM28A0A1B0GU29 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25■■□□□ 1.59
SMIM28A0A1B0GU29 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25■■□□□ 1.59
SMIM28A0A1B0GU29 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25■■□□□ 1.59
SMIM28A0A1B0GU29 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25■■□□□ 1.59
SMIM28A0A1B0GU29 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 AC022211.4-201ENST00000625094 2161 ntBASIC24.99■■□□□ 1.59
SMIM28A0A1B0GU29 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 AC131274.2-201ENST00000580697 1507 ntBASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SMIM28A0A1B0GU29 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.98■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms