Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 SPCS2P3-201ENST00000500401 656 ntBASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 AL592293.1-201ENST00000502889 1188 ntBASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.68■□□□□ 0.58
TRAV3A0A0B4J244 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV3A0A0B4J244 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV3A0A0B4J244 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.65■□□□□ 0.58
TRAV3A0A0B4J244 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV3A0A0B4J244 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.65■□□□□ 0.58
TRAV3A0A0B4J244 RPS2P7-201ENST00000447334 885 ntBASIC18.65■□□□□ 0.58
TRAV3A0A0B4J244 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV3A0A0B4J244 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC18.65■□□□□ 0.58
TRAV3A0A0B4J244 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV3A0A0B4J244 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRAV3A0A0B4J244 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV3A0A0B4J244 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV3A0A0B4J244 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV3A0A0B4J244 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TRAV3A0A0B4J244 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV3A0A0B4J244 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV3A0A0B4J244 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV3A0A0B4J244 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 AC018755.3-202ENST00000596210 929 ntBASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 HYI-213ENST00000583037 1322 ntTSL 5 BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV3A0A0B4J244 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV3A0A0B4J244 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV3A0A0B4J244 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV3A0A0B4J244 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV3A0A0B4J244 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV3A0A0B4J244 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.62■□□□□ 0.57
TRAV3A0A0B4J244 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAV3A0A0B4J244 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
TRAV3A0A0B4J244 DUSP8P5-201ENST00000422884 1815 ntBASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 AC068473.5-201ENST00000616428 2072 ntBASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAV3A0A0B4J244 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV3A0A0B4J244 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TRAV3A0A0B4J244 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms