Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 AC105021.1-202ENST00000570572 669 ntBASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 AC023024.2-201ENST00000623561 1993 ntBASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.94■□□□□ 0.14
TRIM56Q9BRZ2 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 AGAP7P-201ENST00000582299 2062 ntBASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 AGAP14-201ENST00000624701 2060 ntBASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 AC007686.3-201ENST00000619017 3487 ntBASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 HIST3H2BA-201ENST00000436555 524 ntBASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 RBPMS2P1-201ENST00000437762 623 ntBASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
TRIM56Q9BRZ2 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 DNAJB3-202ENST00000449667 1266 ntBASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 AL133215.2-201ENST00000609242 977 ntBASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 AC003101.2-201ENST00000612557 442 ntBASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 AC018529.1-201ENST00000613063 361 ntBASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.92■□□□□ 0.14
TRIM56Q9BRZ2 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms