Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 TP73-209ENST00000603362 1668 ntTSL 5 BASIC17.78■□□□□ 0.44
USP28Q96RU2 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.78■□□□□ 0.44
USP28Q96RU2 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
USP28Q96RU2 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.78■□□□□ 0.44
USP28Q96RU2 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.78■□□□□ 0.44
USP28Q96RU2 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.78■□□□□ 0.44
USP28Q96RU2 AC015922.1-201ENST00000421102 1152 ntBASIC17.78■□□□□ 0.44
USP28Q96RU2 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 DNAJB3-202ENST00000449667 1266 ntBASIC17.78■□□□□ 0.44
USP28Q96RU2 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.78■□□□□ 0.44
USP28Q96RU2 SNHG9-202ENST00000564014 471 ntBASIC17.78■□□□□ 0.44
USP28Q96RU2 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.78■□□□□ 0.44
USP28Q96RU2 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.78■□□□□ 0.44
USP28Q96RU2 Z92544.3-201ENST00000624747 417 ntBASIC17.78■□□□□ 0.44
USP28Q96RU2 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.78■□□□□ 0.44
USP28Q96RU2 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
USP28Q96RU2 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
USP28Q96RU2 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
USP28Q96RU2 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
USP28Q96RU2 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
USP28Q96RU2 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 AL133267.1-201ENST00000398220 340 ntBASIC17.77■□□□□ 0.44
USP28Q96RU2 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.77■□□□□ 0.44
USP28Q96RU2 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
USP28Q96RU2 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.77■□□□□ 0.44
USP28Q96RU2 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
USP28Q96RU2 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP28Q96RU2 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
USP28Q96RU2 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
USP28Q96RU2 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP28Q96RU2 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.77■□□□□ 0.43
USP28Q96RU2 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP28Q96RU2 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP28Q96RU2 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
USP28Q96RU2 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
USP28Q96RU2 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.76■□□□□ 0.43
USP28Q96RU2 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.76■□□□□ 0.43
USP28Q96RU2 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.76■□□□□ 0.43
USP28Q96RU2 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.76■□□□□ 0.43
USP28Q96RU2 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
USP28Q96RU2 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 AC026748.1-201ENST00000624349 3251 ntBASIC17.76■□□□□ 0.43
USP28Q96RU2 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
USP28Q96RU2 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.76■□□□□ 0.43
USP28Q96RU2 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.76■□□□□ 0.43
USP28Q96RU2 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.76■□□□□ 0.43
USP28Q96RU2 TSEN15P1-201ENST00000423257 515 ntBASIC17.76■□□□□ 0.43
USP28Q96RU2 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.76■□□□□ 0.43
USP28Q96RU2 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
USP28Q96RU2 AC051619.7-201ENST00000568314 623 ntBASIC17.76■□□□□ 0.43
USP28Q96RU2 AC025181.2-201ENST00000606994 802 ntBASIC17.76■□□□□ 0.43
USP28Q96RU2 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
USP28Q96RU2 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms