Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ATG4AQ8WYN0 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.14■□□□□ 0.18
ATG4AQ8WYN0 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
ATG4AQ8WYN0 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
ATG4AQ8WYN0 KRT8P12-202ENST00000472924 1397 ntBASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 KRT18P64-201ENST00000434946 1219 ntBASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 DNAJB3-201ENST00000446806 729 ntBASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 AC010327.4-202ENST00000591484 748 ntBASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 MIR6080-201ENST00000617359 66 ntBASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 AC005912.2-201ENST00000619492 2400 ntBASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ATG4AQ8WYN0 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 AP000845.1-201ENST00000581677 2131 ntBASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 RPL5P21-201ENST00000404620 815 ntBASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 AC009093.7-201ENST00000623853 1223 ntBASIC16.13■□□□□ 0.17
ATG4AQ8WYN0 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms