Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.28□□□□□ -0.12
USP43Q70EL4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.28□□□□□ -0.12
USP43Q70EL4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.28□□□□□ -0.12
USP43Q70EL4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.27□□□□□ -0.12
USP43Q70EL4 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
USP43Q70EL4 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.27□□□□□ -0.12
USP43Q70EL4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.27□□□□□ -0.12
USP43Q70EL4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
USP43Q70EL4 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
USP43Q70EL4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.12
USP43Q70EL4 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
USP43Q70EL4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
USP43Q70EL4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.27□□□□□ -0.12
USP43Q70EL4 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
USP43Q70EL4 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
USP43Q70EL4 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.27□□□□□ -0.12
USP43Q70EL4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USP43Q70EL4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP43Q70EL4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP43Q70EL4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
USP43Q70EL4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.27□□□□□ -0.13
USP43Q70EL4 RPS8P6-201ENST00000426177 609 ntBASIC14.27□□□□□ -0.13
USP43Q70EL4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC14.27□□□□□ -0.13
USP43Q70EL4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.27□□□□□ -0.13
USP43Q70EL4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 AC087641.1-201ENST00000557561 1021 ntBASIC14.27□□□□□ -0.13
USP43Q70EL4 AC027796.2-201ENST00000575326 344 ntBASIC14.27□□□□□ -0.13
USP43Q70EL4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP43Q70EL4 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
USP43Q70EL4 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP43Q70EL4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USP43Q70EL4 REXO1L1P-202ENST00000608646 1974 ntBASIC14.27□□□□□ -0.13
USP43Q70EL4 ZBED1P1-201ENST00000502364 1930 ntBASIC14.27□□□□□ -0.13
USP43Q70EL4 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP43Q70EL4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
USP43Q70EL4 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USP43Q70EL4 AL023775.1-201ENST00000454907 1746 ntBASIC14.27□□□□□ -0.13
USP43Q70EL4 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.13
USP43Q70EL4 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.26□□□□□ -0.13
USP43Q70EL4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.26□□□□□ -0.13
USP43Q70EL4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.26□□□□□ -0.13
USP43Q70EL4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 AL353732.1-201ENST00000569618 1459 ntBASIC14.26□□□□□ -0.13
USP43Q70EL4 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
USP43Q70EL4 AC136759.1-202ENST00000530858 2194 ntBASIC14.26□□□□□ -0.13
USP43Q70EL4 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
USP43Q70EL4 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
USP43Q70EL4 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.26□□□□□ -0.13
USP43Q70EL4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
USP43Q70EL4 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14.26□□□□□ -0.13
USP43Q70EL4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
USP43Q70EL4 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.26□□□□□ -0.13
USP43Q70EL4 AC211486.1-202ENST00000416371 468 ntBASIC14.26□□□□□ -0.13
USP43Q70EL4 MCCD1P2-201ENST00000423228 335 ntBASIC14.26□□□□□ -0.13
USP43Q70EL4 PAWRP1-201ENST00000451083 565 ntBASIC14.26□□□□□ -0.13
USP43Q70EL4 AC211476.1-201ENST00000503899 468 ntBASIC14.26□□□□□ -0.13
USP43Q70EL4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USP43Q70EL4 AC136632.2-201ENST00000512891 861 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms