Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC12□□□□□ -0.49
HIST1H1AQ02539 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 GPX1P2-201ENST00000429271 606 ntBASIC12□□□□□ -0.49
HIST1H1AQ02539 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC12□□□□□ -0.49
HIST1H1AQ02539 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC12□□□□□ -0.49
HIST1H1AQ02539 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC12□□□□□ -0.49
HIST1H1AQ02539 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC12□□□□□ -0.49
HIST1H1AQ02539 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC12□□□□□ -0.49
HIST1H1AQ02539 AC040169.1-201ENST00000565382 521 ntBASIC12□□□□□ -0.49
HIST1H1AQ02539 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12□□□□□ -0.49
HIST1H1AQ02539 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC12□□□□□ -0.49
HIST1H1AQ02539 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 AC008267.7-201ENST00000624570 1194 ntBASIC12□□□□□ -0.49
HIST1H1AQ02539 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
HIST1H1AQ02539 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12□□□□□ -0.49
HIST1H1AQ02539 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
HIST1H1AQ02539 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12□□□□□ -0.49
HIST1H1AQ02539 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
HIST1H1AQ02539 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
HIST1H1AQ02539 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 TIMM8BP1-201ENST00000452384 211 ntBASIC11.99□□□□□ -0.49
HIST1H1AQ02539 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
HIST1H1AQ02539 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms