Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC9.3□□□□□ -0.92
HSPG2P98160 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC9.3□□□□□ -0.92
HSPG2P98160 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC9.3□□□□□ -0.92
HSPG2P98160 AL590235.1-201ENST00000564650 861 ntBASIC9.3□□□□□ -0.92
HSPG2P98160 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC9.3□□□□□ -0.92
HSPG2P98160 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC9.3□□□□□ -0.92
HSPG2P98160 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 CTBP2P8-201ENST00000422584 1330 ntBASIC9.3□□□□□ -0.92
HSPG2P98160 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
HSPG2P98160 AC009090.5-201ENST00000624886 2285 ntBASIC9.3□□□□□ -0.92
HSPG2P98160 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC9.3□□□□□ -0.92
HSPG2P98160 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC9.3□□□□□ -0.92
HSPG2P98160 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
HSPG2P98160 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 AL807761.2-201ENST00000422849 729 ntBASIC9.3□□□□□ -0.92
HSPG2P98160 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC9.3□□□□□ -0.92
HSPG2P98160 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC9.3□□□□□ -0.92
HSPG2P98160 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC9.3□□□□□ -0.92
HSPG2P98160 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC9.3□□□□□ -0.92
HSPG2P98160 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC9.3□□□□□ -0.92
HSPG2P98160 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
HSPG2P98160 CYP4F23P-201ENST00000593402 1579 ntBASIC9.3□□□□□ -0.92
HSPG2P98160 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 SURF4-203ENST00000371991 715 ntTSL 3 BASIC9.29□□□□□ -0.92
HSPG2P98160 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 PPIA-208ENST00000489459 907 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC9.29□□□□□ -0.92
HSPG2P98160 MIR3180-2-201ENST00000581748 88 ntBASIC9.29□□□□□ -0.92
HSPG2P98160 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 PPIA-210ENST00000620047 827 ntTSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC9.29□□□□□ -0.92
HSPG2P98160 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 DUTP3-201ENST00000450025 415 ntBASIC9.29□□□□□ -0.92
HSPG2P98160 IGHEP1-201ENST00000521393 651 ntBASIC9.29□□□□□ -0.92
HSPG2P98160 AC100827.2-201ENST00000563214 1194 ntBASIC9.29□□□□□ -0.92
HSPG2P98160 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC9.29□□□□□ -0.92
HSPG2P98160 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 AL353622.2-201ENST00000605846 425 ntBASIC9.29□□□□□ -0.92
HSPG2P98160 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC9.29□□□□□ -0.92
HSPG2P98160 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 AC018629.1-201ENST00000623381 1736 ntBASIC9.29□□□□□ -0.92
HSPG2P98160 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 RAN-210ENST00000541630 1475 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 FTX-216ENST00000638985 1367 ntTSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 RNLS-203ENST00000437752 525 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC9.29□□□□□ -0.92
HSPG2P98160 EHF-205ENST00000527935 557 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC9.29□□□□□ -0.92
HSPG2P98160 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC9.29□□□□□ -0.92
HSPG2P98160 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
HSPG2P98160 ME2P1-201ENST00000426028 1970 ntBASIC9.29□□□□□ -0.92
HSPG2P98160 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
HSPG2P98160 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms